Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04178 ATGTTCATTTCACCTTCATTCTCATCTTCAACTTGTTCCAACAACAATGATACTCTCCTTTCTTCAAAATTAACAGCAGAAAATCTCATAAGAGGACTAAATCTTTTTCCAAAACATTCCATAAACATAGCAAAGAATGTTCCTCATTTTGTTCATGGAAACATTGTTGAGAAGAAGTTCACTTTCCCTAGTTTGGTTGACTCTAGTCCTTCTGTTGAAGAACTTGGTCATCATGCAGGGTATTATAGTCTTCCTCATTCCAAAGCTGCAAGAATGTTTTATTTTTTCTTTGAATCTCGAAACAATAAAGATGATCCTGTTGTCATATGGTTAACTGGAGGTCCAGGATGCAGCAGTGATCTTGCTTTGTTTTATGAAAATGGTCCTTTTCAATTTTCCAAGGACAACAACAACTTGTCCCTTGTTTGGAATGAATATGGATGGGACGCGGCATCAAATATTATATTTGTAGACCAACCCATAGGAACAGGTTTCAGCTACACTACTGATGATAGCGATATTCGCCATGACGAAAATGAAATTAGCAATGATTTGTATGACTTCTTGCAGGCATTCTTCAAGGAGCACCCTCAGTTCACTAAGAACGATTTTTATATAACTGGAGAATCATATGCTGGACATTACATACCAGCTTTTGCATCCAGAGTTCATCAAGGAAACAAGGCAAACGAAGGAATTCATATAAATCTAAAGGGATTTGCTATTGGGAATGGATTAACCAATCCTGAAATTCAATACAAGGCATATACAGATTTTGCATTAGACAATGGACTAATTAATAAGGAAGAACATGACAATATCACAGAGTTGTTCCCACAATGTCAAAAGGGCATAGAAGATTGTGGCACCGAAGGTGGAGACGCATGCTTTACTTCAAGAGAAAATTGCTTTAAAATATTCCATCGGATCCTGGCCATCGCCGGTAACATTAATTACTACGACATCAGAAAGAAATGTGAGGGAAGTCTCTGTTATGACTTCTCCAAGATGGTGACATTCTTGAACATGCAGACAGTAAGAGAAGCTTTAGGTGTTGGGGACTTGAAATTTGTTTCCTGTAGTACCAAAGTATACTATAACATGTTGGAGGATTGGATGAAAAATCTTGAAGTTGGTATTCCTGCTCTTCTTGAGGATGGAATCAATTTGCTTGTGTATGCTGGAGAATATGATCTCATATGCAATTGGCTTGGGAATTCGAGGTGGGTTGATGCGATGAATTGGTCAGGTCAAAAAGAATTTACTGAGTCTTCTGCAACCCCTTATTTGGTTGATAGTGAAGAAGTAGGAACTCTAAAAAGCCATGGACCTTTGGCTTTCCTCAAGGTGAAAGACGCTGGTCACATGGTTCCAATGGATCAACCAAAAGCTGCACTTCAAATGTTAAGAGATTGGATGCAAGGGAAACTATTAAAGACATAA 1443 0.3798 MFISPSFSSSTCSNNNDTLLSSKLTAENLIRGLNLFPKHSINIAKNVPHFVHGNIVEKKFTFPSLVDSSPSVEELGHHAGYYSLPHSKAARMFYFFFESRNNKDDPVVIWLTGGPGCSSDLALFYENGPFQFSKDNNNLSLVWNEYGWDAASNIIFVDQPIGTGFSYTTDDSDIRHDENEISNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGNGLTNPEIQYKAYTDFALDNGLINKEEHDNITELFPQCQKGIEDCGTEGGDACFTSRENCFKIFHRILAIAGNINYYDIRKKCEGSLCYDFSKMVTFLNMQTVREALGVGDLKFVSCSTKVYYNMLEDWMKNLEVGIPALLEDGINLLVYAGEYDLICNWLGNSRWVDAMNWSGQKEFTESSATPYLVDSEEVGTLKSHGPLAFLKVKDAGHMVPMDQPKAALQMLRDWMQGKLLKT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04178 480 SUPERFAMILY alpha/beta-Hydrolases 76 477 IPR029058 -
Trre12g04178 480 Gene3D alpha/beta hydrolase 54 479 IPR029058 -
Trre12g04178 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 192 217 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 167 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 156 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 ProSitePatterns Serine carboxypeptidases, serine active site. 206 213 IPR018202 GO:0004185
Trre12g04178 480 FunFam Carboxypeptidase 64 480 - -
Trre12g04178 480 Pfam Serine carboxypeptidase 75 475 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 71 462 IPR001563 GO:0004185|GO:0006508
Trre12g04178 480 ProSitePatterns Serine carboxypeptidases, histidine active site. 445 462 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04178 Trre-Chr12 56866974 56877474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04178 340 478 Calmodulin-binding Proteins AT2G22960 21.918 2.84e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04178 K16298 - gmx:100785987 730.709