Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04177 ATGGCATCATCATCCTTAAGGTTCCTCAAAATGTGTCTATCTTTTTTAATGATGTTGTTTTTCCTCATCATGTTCATTTCACCTTCATTCTCATCTTCAACTTGTTCCAACAACAATGATACTCTCCTTTCTTCAAAATTAACAGCAGAAAATCTCATAAGAGGACTAAATCTTTTTCCAAAACATTCCATAAACATAGCAAAGAATGTTCCTCATTTTGTTCATGGAAACATTGTTGAGAAGAAGTTCACTTTCCCTAGTTTGGTTGACTCTAGTCCTTCTGTTGAAGAACTTGGTCATCATGCAGGGTATTATAGTCTTCCTCATTCCAAAGCTGCAAGAATGTTTTATTTTTTCTTTGAATCTCGAAACAATAAAGATGATCCTGTTGTCATATGGTTAACTGGAGGTCCAGGATGCAGCAGTGATCTTGCTTTGTTTTATGAAAATGGTCCTTTTCAATTTTCCAAGGACAACAACAACTTGTCCCTTGTTTGGAATGAATATGGATGGGACGCGGCATCAAATATTATATTTGTAGACCAACCCATAGGAACAGGTTTCAGCTACACTACTGATGATAGCGATATTCGCCATGACGAAAATGAAATTAGCAATGATTTGTATGACTTCTTGCAGGCATTCTTCAAGGAGCACCCTCAGTTCACTAAGAACGATTTTTATATAACTGGAGAATCATATGCTGGACATTACATACCAGCTTTTGCATCCAGAGTTCATCAAGGAAACAAGGCAAACGAAGGAATTCATATAAATCTAAAGGGATTTGCTATTGGGAATGGATTAACCAATCCTGAAATTCAATACAAGGCATATACAGATTTTGCATTAGACAATGGACTAATTAATAAGGAAGAACATGACAATATCACAGAGTTGTTCCCACAATGTCAAAAGGGCATAGAAGATTGTGGCACCGAAGGTGGAGACGCATGCTTTACTTCAAGAGAAAATTGCTTTAAAATATTCCATCGGATCCTGGCCATCGCCGGTAACATTAATTACTACGACATCAGAAAGAAATGTGAGGGAAGTCTCTGTTATGACTTCTCCAAGATGGTGACATTCTTGAACATGCAGACAGTAAGAGAAGCTTTAGGTGTTGGGGACTTGAAATTTGTTTCCTGTAGTACCAAAGTATACTATAACATGTTGGAGGATTGGATGAAAAATCTTGAAGTTGGTATTCCTGCTCTTCTTGAGGATGGAATCAATTTGCTTGTGTATGCTGGAGAATATGATCTCATATGCAATTGGCTTGGGAATTCGAGGTGGGTTGATGCGATGAATTGGTCAGGTCAAAAAGAATTTACTGAGTCTTCTGCAACCCCTTATTTGGTTGATAGTGAAGAAGTAGGAACTCTAAAAAGCCATGGACCTTTGGCTTTCCTCAAGGTGAAAGACGCTGGTCACATGGTTCCAATGGATCAACCAAAAGCTGCACTTCAAATGTTAAGAGATTGGATGCAAGGGAAACTATTAAAGACATAA 1512 0.3776 MASSSLRFLKMCLSFLMMLFFLIMFISPSFSSSTCSNNNDTLLSSKLTAENLIRGLNLFPKHSINIAKNVPHFVHGNIVEKKFTFPSLVDSSPSVEELGHHAGYYSLPHSKAARMFYFFFESRNNKDDPVVIWLTGGPGCSSDLALFYENGPFQFSKDNNNLSLVWNEYGWDAASNIIFVDQPIGTGFSYTTDDSDIRHDENEISNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGNGLTNPEIQYKAYTDFALDNGLINKEEHDNITELFPQCQKGIEDCGTEGGDACFTSRENCFKIFHRILAIAGNINYYDIRKKCEGSLCYDFSKMVTFLNMQTVREALGVGDLKFVSCSTKVYYNMLEDWMKNLEVGIPALLEDGINLLVYAGEYDLICNWLGNSRWVDAMNWSGQKEFTESSATPYLVDSEEVGTLKSHGPLAFLKVKDAGHMVPMDQPKAALQMLRDWMQGKLLKT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04177 503 ProSitePatterns Serine carboxypeptidases, histidine active site. 468 485 IPR033124 GO:0004185
Trre12g04177 503 FunFam Carboxypeptidase 87 503 - -
Trre12g04177 503 ProSitePatterns Serine carboxypeptidases, serine active site. 229 236 IPR018202 GO:0004185
Trre12g04177 503 SUPERFAMILY alpha/beta-Hydrolases 99 500 IPR029058 -
Trre12g04177 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Trre12g04177 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 190 IPR001563 GO:0004185|GO:0006508
Trre12g04177 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 179 IPR001563 GO:0004185|GO:0006508
Trre12g04177 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 215 240 IPR001563 GO:0004185|GO:0006508
Trre12g04177 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 94 485 IPR001563 GO:0004185|GO:0006508
Trre12g04177 503 Gene3D alpha/beta hydrolase 77 502 IPR029058 -
Trre12g04177 503 Pfam Serine carboxypeptidase 98 498 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04177 Trre-Chr12 56866974 56877543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04177 363 501 Calmodulin-binding Proteins AT2G22960 21.918 2.30e-06 46.6