Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04172 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGATTCAAAGCTCAAAGATTATATAGAAAAAAATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTTTAAGGAGATGTGGAAAAAGTTGCAGATTAAGATGGCTTAACTATCTTAGGCCAAATATTAAACATGGAGAATTTTCAGATGATGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTTCACAATTACCTGGAAGAACTGATAATGATATAAAAAACTATTGGAACACAAAACTAAAGAAGAAACTAATGAATTTGCTTCCTCAATCTCATCATAACACAATTCTACCTTATCAACAAATCTCTTCTCCATTACCTTCTCATTGCACCTCATATTACAATCAACAAAACACATCTTTCATTTCAAACATTGAACAAATTTCACTTCCTTCATCATCAAGTAGTTGTTGCAACACAATAAGCTCAATCTCTAACCCTTTTTACCATAACCAAGAGTCTTTGTTCAATGGTTTTAGTACAAACACTTCCATGCAATATCATAATTCTATTGGTGAAAGTGTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCTGATGGAAGTCTTGGAAAACAAGAAGAAATAATTATGGGAGGATTTCAAAATTTCATGCAAAGTAGTCATAATAACAAGTTGATCAATCTTAGTCATGGAAGTGATGGAAGAGTAGGAGAATATCTTGTTCATGTTAACCATTGGGAAAATGAAAAGGTGAATTTATGCTTTGGTCAATATCAAAAGGAAATTACAACAGCTTTGGATTATGATCTTGAGTATATTAAGCAATTAATTAGTAGTAATAATGGTAATAATTACTTAAGTGTTGATGAAAACAAGAGGAAGGAGGAGATGACTATGTACTACTACTGA 978 0.3323 MGRAPCCDKANVKKGPWSPEEDSKLKDYIEKNGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLYANIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKLMNLLPQSHHNTILPYQQISSPLPSHCTSYYNQQNTSFISNIEQISLPSSSSSCCNTISSISNPFYHNQESLFNGFSTNTSMQYHNSIGESVVMFGSEGSCCSSSDGSLGKQEEIIMGGFQNFMQSSHNNKLINLSHGSDGRVGEYLVHVNHWENEKVNLCFGQYQKEITTALDYDLEYIKQLISSNNGNNYLSVDENKRKEEMTMYYY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04172 325 CDD SANT 70 111 IPR001005 -
Trre12g04172 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre12g04172 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre12g04172 325 Gene3D - 7 68 - -
Trre12g04172 325 Gene3D - 69 134 - -
Trre12g04172 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre12g04172 325 PANTHER OS09G0431300 PROTEIN 1 272 - -
Trre12g04172 325 FunFam Transcription factor RAX3 7 68 - -
Trre12g04172 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre12g04172 325 CDD SANT 16 62 IPR001005 -
Trre12g04172 325 SMART sant 67 115 IPR001005 -
Trre12g04172 325 SMART sant 13 64 IPR001005 -
Trre12g04172 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre12g04172 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre12g04172 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04172 Trre-Chr12 56797328 56799032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04172 1 119 MYB Transcription Factor Family AT5G65790 87.395 3.14e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g04172 Myb_DNA-binding 3.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04172 K09422 - gmx:100808114 333.183