Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04171 ATGCAAAGATCAGGTTTTGGTTCGGATGGAATATACAGGTCTCTAAGACCTTCCCTTACCTTACCAAAAAACCCGAACCTCTCTCTCGTTACACACTTATTCAACAAAGTCGCTTCTTCTCAAAACAAAACCGCTCTTATAGATGCAGACTCTTACCAAACCCTAACTTTCGCTCAATTAAAATCACTTACAATTAAACTCGCACATGCTTTAATTCACATCGGTATAAAAAAAACCGACGTCGTTTTATTCCTCGCTCCAAATAGTTATCTCTATCCTGTTTTCTTCCTCGCCGTTGCTTCCATCGGCGCCGTCGCCTCCACCGTCAATCCTACCTACACCACCAATGAAGTCTCAAAACAAGCAAAAGATTCAAATCCAAAGCTCATCATCACCGTCGCTGAATTATGGGAGAAAGTAAAACACCTCAATGTCCCCGCCGTTTTTCTCAACTCCGGCACTACGCCGACGACAACATCGACACCGAATGTTACGAGTTTAGAATCGTTCATCAAACTCGGCGAATCGGAAACTAAATTTCCGGAAATTGATGTGAAACAGAGCGACACGGCGGCGCTTTTGTATTCCTCCGGTACGACAGGTGTAAGCAAAGGTGTAATTCTCACGCACGGGAATTTCATCGCTTCTGCATCGATGATTTCAATGGATGATGAATTGAACGGAGATATAAACGACGTGTATCTCGTTGTTCTTCCAATGTTTCATGTGTTTGGACTTGCGGTGATTACGTTTTCTCAGCTTGTGAGAGGTAACTGTGTGGTTTCGTTGAAGAGATTTGAATTTGAAGTGGTTTTGAAAACTATTGAGAAATTTAGGGTTACAAGATTATGGGTTGTGCCTCCTATTATACTTGCACTTGCTAAAAATGGTTTGGTTGATAAGTATGATCTTTCTTCATTGAAATATATTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAAGAGTGTGCTAAGCGGTTCCCTCATGCTGTTGTTTCTCAGGGCTATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATACTGGCTCAGCTGGAATGCTTGTTGCTGGAGTGGAAGCTCAAATTGTCAGTGTGGACACACTGAAGCCACTCCCTCCTGGACAGCTTGGTGAGATATGGGTACGAGGTCCTAACATGATGCCAGGTTATCATAACAATCCACAGGCCACAAGATTAACTATAGATGACAAAGGGTGGGTACATACAGGAGATCTTGGATACTTTGATGAGGATGGTCATCTTTTTGTCGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTGGTTATTCCATTCCCAGATGCTGAAGCCGGTGAGGTTCCTGTTGCCTATGTTGTACGATCACCCAATAGTTCACTAACCGAGGAAGATATTAAAAAGTTCATTGCTAATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTAACATTCATCAAAACTGTTCCGAAAACAGCATCAGGAAAAATTCTTAGAAGAGAGCTTATCGACAAAGCCCGATCCAAAATATAA 1629 0.426 MQRSGFGSDGIYRSLRPSLTLPKNPNLSLVTHLFNKVASSQNKTALIDADSYQTLTFAQLKSLTIKLAHALIHIGIKKTDVVLFLAPNSYLYPVFFLAVASIGAVASTVNPTYTTNEVSKQAKDSNPKLIITVAELWEKVKHLNVPAVFLNSGTTPTTTSTPNVTSLESFIKLGESETKFPEIDVKQSDTAALLYSSGTTGVSKGVILTHGNFIASASMISMDDELNGDINDVYLVVLPMFHVFGLAVITFSQLVRGNCVVSLKRFEFEVVLKTIEKFRVTRLWVVPPIILALAKNGLVDKYDLSSLKYIGSGAAPLGKELMEECAKRFPHAVVSQGYGMTETCGIVSVENTRMGIRHTGSAGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMPGYHNNPQATRLTIDDKGWVHTGDLGYFDEDGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIKKFIANQVAPFKRLRRVTFIKTVPKTASGKILRRELIDKARSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04171 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Trre12g04171 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Trre12g04171 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Trre12g04171 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Trre12g04171 542 Pfam AMP-binding enzyme 36 444 IPR000873 -
Trre12g04171 542 Gene3D - 440 541 IPR045851 -
Trre12g04171 542 Gene3D - 9 439 IPR042099 -
Trre12g04171 542 CDD 4CL 21 534 - -
Trre12g04171 542 SUPERFAMILY Acetyl-CoA synthetase-like 23 540 - -
Trre12g04171 542 FunFam 4-coumarate--CoA ligase 2 440 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04171 Trre-Chr12 56787117 56790599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04171 1 542 Monolignol Biosynthesis Gene Families AT4G05160 66.544 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04171 K01904 - gmx:100797843 840.876