Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04165 ATGAATCCTTCAGAGATAGAATCTCTATCAGTTACTTTCCATGGACACGATCTTATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTGAACGGTTGTGGAAAATCTACCCTACTTACGGCAATAGGTCGCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAAGAAAGGTTGAGGTTGGAGAAAGAAGCTGAAATTCTGGGAGCACAAGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGCGATTTTTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCCCTGTTTATGAACCCAACCATTCTTCTACTTGATGAACCAACTAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTAATTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATCGCCTCAATGAAGGAATACATTGCACGGTTTGGCCATGGATCAGCTAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTAATGTGGGGAAACTTCCCCCACCAGTCCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATCGACTTTGGAGTCGATTTAGACTCCAGGATTGCTTTGGTTGGACCCAATGGAGCTGGGAAGAGCACATTCCTGAAACTTATGACAGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAATCACCTTCGCATTGCACAATTTCACCAGCACTTAACTGAAAAGCTAGACCTGGAACTGTCTGCCCTCCAATTTATGATTAAAGAATACCCTGGAAATGAGGAAGAGAGAATGAGAGCAGCTATTGGAAAATTTGGTTTATCAGGTAAAGCGCAGGTGATGCCTATGAGAAATTTATCCGATGGACAAAGGAGCCGTGTGATCTTTGCATGGTTAGCCTATAGACAGCCTCACTTGCTACTATTAGATGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCGTTAGCGGAGGCACTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAGGCAGGTTTAGCTGATTGA 1593 0.4338 MNPSEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGRRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVNVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04165 530 FunFam Abc transporter f family member 1 4 268 - -
Trre12g04165 530 Gene3D - 5 268 IPR027417 -
Trre12g04165 530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 244 IPR003439 GO:0005524
Trre12g04165 530 Pfam ABC transporter 215 287 IPR032781 -
Trre12g04165 530 Coils Coil 222 242 - -
Trre12g04165 530 ProSitePatterns ABC transporters family signature. 148 162 IPR017871 GO:0005524|GO:0016887
Trre12g04165 530 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 525 - -
Trre12g04165 530 SMART AAA_5 28 230 IPR003593 GO:0016887
Trre12g04165 530 SMART AAA_5 340 528 IPR003593 GO:0016887
Trre12g04165 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 509 IPR027417 -
Trre12g04165 530 Pfam ABC transporter 331 462 IPR003439 GO:0005524
Trre12g04165 530 CDD ABCF_EF-3 315 507 - -
Trre12g04165 530 CDD ABCF_EF-3 5 221 - -
Trre12g04165 530 Gene3D - 285 528 IPR027417 -
Trre12g04165 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 249 IPR027417 -
Trre12g04165 530 Pfam ABC transporter 22 176 IPR003439 GO:0005524
Trre12g04165 530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 315 530 IPR003439 GO:0005524
Trre12g04165 530 FunFam ATP-binding cassette sub-family F member 3 275 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04165 Trre-Chr12 56751229 56753691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04165 315 508 Calmodulin-binding Proteins AT2G36910 26.222 2.82e-09 58.2