Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04164 ATGGCTAAGTTCATTGTGAGAAATAGTAACAAAAAGAAGAGTGGAGGTAGCATTGTGAAGCTCATTGAGAAGCTACAAAAGAAAATCTTGCTAGGGAGAAACAAATCAACATCAACCTATGTGCCTGAGGATGTGAAGGAAGGACATTTTGCTGTGATAGCTGAGGATAGAGAAGATCAAGAACCAAAGAGATTTGTGTTACCATTAAGTTGTTTAACAAATCCAACATTTGTTAGGCTATTGGAGCAAGCAGAAGAAGAGTATGGTTTTGATCATGAAGGTGCACTAACCATTCCTTGTAAGCCTAGTGAACTTCACAAGATGTTGCTACAATGGCAACAAGAAGAATACAATTCCCCCAATAATTCCATGGTTTTTCAAAACTATTGA 390 0.3744 MAKFIVRNSNKKKSGGSIVKLIEKLQKKILLGRNKSTSTYVPEDVKEGHFAVIAEDREDQEPKRFVLPLSCLTNPTFVRLLEQAEEEYGFDHEGALTIPCKPSELHKMLLQWQQEEYNSPNNSMVFQNY 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04164 129 Pfam Auxin responsive protein 33 108 IPR003676 GO:0009733
Trre12g04164 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04164 Trre-Chr12 56739624 56740013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04164 42 111 Calmodulin-binding Proteins AT3G43120 50.000 6.04e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04164 - K14488 cam:101506786 173.326