Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04161 ATGTCTCAACCTGAATCATCCGACTCAAAATCAGTAAAGAAGGACTTTTCCACCGCGATTCTGGAACGCAAGAAGTCACCAAACCGGCTTGTTGTGGATGAAGCGCTTAACGATGACAACTCCGTTGTTGTCATGCACCCACAAACTATGGAAAAGTTGGGGATTTTCAGAGGTGACACTATTCTCATCAAGGGAAAGAAAAGGAAGGATACTATTTGTATAGCTCTTGCTGAGGATACTTGTGAGGAGCCTAAGATTAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGACTTGGAGATGTTGTGTCTGTGCACCAGTGTTCTGATGTCAAGTATGGGAAACGTGTGCACATTCTTCCTATTGATGATACCATCGAGGGCATCACTGGCAATCTCTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCTTATCGTCCCGTCAGAAAGGGAGATCTATTTCTTGTGCGGGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGACACTGAGGTCTTCTGCGAGGGGGAACCTGTGAAAAGAGAGGATGAAGATAGGCTTGATGAAGTCGGTTATGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATTCGTGAGTTGGTTGAGCTTCCACTGAGGCATCCACAACTTTTTAAGTCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTATATGGACCCCCGGGTTCTGGAAAGACCTTAATAGCAAGAGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCGAAACTGGCTGGAGAGAGTGAAAGCAATCTTAGGAAAGCATTTGAGGAAGCTGAAAAAAATGCACCATCCATCATCTTTATTGATGAAATTGATTCTATTGCACCAAAGCGGGAGAAGACACACGGTGAAGTTGAAAGAAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATGGGTGCCACTAATCGTCCAAATAGCATTGACCCGGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATCGATATTGGTGTTCCAGATGAAATCGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAGAATTTCAAAAGATACTCATGGGTATGTAGGTGCCGACCTTGCTGCTCTTTGCACCGAAGCTGCTTTGCAATGTATTAGGGAGAAGATGGACCTCATTGACTTAGAGGATGAGACTATTGATGCCGAAATACTGAATTCCATGGCAGTTACAAATGAGCATTTCCATACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAGGTTCCTAATGTCAGCTGGGAGGACATCGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCCGTTGAGCACCCGGAAAAGTTTGAGAAGTTTGGCATGTCACCATCAAAAGGAGTTCTCTTCTATGGTCCTCCGGGATGTGGTAAAACTTTGTTAGCCAAAGCAATTGCCAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAACGTTAGGGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTTTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGGGGCAGTAGTGGTGATGCTGGTGGTGCTGCTGACAGAGTTCTAAATCAACTTCTGACAGAGATGGATGGCATGTCTGCCAAAAAGACCGTATTCATTATTGGGGCCACTAACAGACCTGACATCATCGATTCAGCACTTCTTCGGCCAGGCCGTCTAGATCAGTTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATTCGATTTTCAAATCCTGCTTGAGGAAGTCACCGGTCGCGAAAGACGTTGATTTGAGAGCATTGGGCAAGTATACTCAAGGTTTTAGTGGTGCCGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAGAAGGACATAGAGCAAGAGAGGAAGAGGAAGGAAAACCCCGAGGCCATGGATGAAGACTTTGTCGACGATGAAGTTGCAGAGATCAAGGCGGCTCATTTTGAGGAGTCGATGAAATATGCACGTAGGAGTGTTAGTGATGCTGATATACGCAAGTATCAGGCATTTGCTCAAACCTTACAACAGTCGAGGGGATTCGGAAGTGAATTTAGGTTTGCAGACACCGGAGATAGGACTACCGGATCCGACCCGTTTGCAACAACAACCGCTGCTGGTGGGGCTGATGAAGATGATCTTTATAGTTAG 2424 0.4435 MSQPESSDSKSVKKDFSTAILERKKSPNRLVVDEALNDDNSVVVMHPQTMEKLGIFRGDTILIKGKKRKDTICIALAEDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEVFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDLIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHSIFKSCLRKSPVAKDVDLRALGKYTQGFSGADITEICQRACKYAIRENIEKDIEQERKRKENPEAMDEDFVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADTGDRTTGSDPFATTTAAGGADEDDLYS 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04161 807 Gene3D - 654 763 - -
Trre12g04161 807 SMART AAA_5 513 652 IPR003593 GO:0016887
Trre12g04161 807 SMART AAA_5 240 376 IPR003593 GO:0016887
Trre12g04161 807 Gene3D - 375 466 - -
Trre12g04161 807 CDD RecA-like_CDC48_r1-like 208 373 - -
Trre12g04161 807 FunFam Cell division control 48 112 208 - -
Trre12g04161 807 FunFam Cell division control 48 375 466 - -
Trre12g04161 807 SUPERFAMILY Cdc48 domain 2-like 111 203 IPR029067 -
Trre12g04161 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 465 IPR027417 -
Trre12g04161 807 FunFam Transitional endoplasmic reticulum ATPase 205 373 - -
Trre12g04161 807 Pfam AAA+ lid domain 672 713 IPR041569 -
Trre12g04161 807 Pfam AAA+ lid domain 396 438 IPR041569 -
Trre12g04161 807 SUPERFAMILY ADC-like 25 109 IPR009010 -
Trre12g04161 807 SMART CDC48_N_2 29 112 IPR003338 -
Trre12g04161 807 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Trre12g04161 807 Gene3D - 6 111 - -
Trre12g04161 807 Pfam Cell division protein 48 (CDC48), N-terminal domain 29 110 IPR003338 -
Trre12g04161 807 NCBIfam CDC48 family AAA ATPase 30 767 IPR005938 GO:0016787
Trre12g04161 807 SMART CDC48_2_2 129 195 IPR004201 -
Trre12g04161 807 Gene3D - 209 373 IPR027417 -
Trre12g04161 807 PANTHER AAA-FAMILY ATPASE 401 769 - -
Trre12g04161 807 FunFam Transitional endoplasmic reticulum ATPase 467 650 - -
Trre12g04161 807 CDD RecA-like_CDC48_r2-like 488 648 - -
Trre12g04161 807 Gene3D - 112 208 - -
Trre12g04161 807 MobiDBLite consensus disorder prediction 774 807 - -
Trre12g04161 807 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Trre12g04161 807 Pfam Cell division protein 48 (CDC48), domain 2 130 194 IPR004201 -
Trre12g04161 807 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Trre12g04161 807 Pfam ATPase family associated with various cellular activities (AAA) 517 650 IPR003959 GO:0005524|GO:0016887
Trre12g04161 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 764 IPR027417 -
Trre12g04161 807 Gene3D - 467 650 IPR027417 -
Trre12g04161 807 FunFam Transitional endoplasmic reticulum ATPase 6 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04161 Trre-Chr12 56693836 56697740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04161 446 709 Calmodulin-binding Proteins AT3G56690 48.106 8.00e-80 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04161 K13525 - gmx:100783508 1513.43