Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04154 ATGTGCAAATCCAAAATGGCCATTGACGCCTCCACCCCCAAAAAATCTAAATCTAAATCTAAATCTAAATCAACTCCACGCTCACAACAAACACCACCACCAACAACATCATCATCATCATCGAAACCACCATCCACACGTGCAACCTCCACACCCACACGTGCAACCTCTCTCCCCAAAACAAAAACAAAAACCTCTTCATTCTCCGATAACCCTTCAACCTCCTACGCATCCACCACCGGTTCAACCGGTTTTCATCTCTCAACAGACACATCAATCTCAAGCAGAACATCTCTAACATCACTTCGCGACACACTTCCAGAAAATCCAAACATCTACGACTTCTCCGAAATCTGTTCCGCAACAAACAACTTCCTCTCAAAACGCTACTCATCTTCCACCCCTTGCTGGCACTGTACTCTACGCGGCGCTGACGTCATCATTTTCCAACGTAAATTCCGACGCAAACTCCAAACCTCTCAGCTTCGTGAACTTCTCTCCGTCGTTTGTCGTAGTCACCACGTCAGCATAATCAAACTCCTCGGCGTTTCAATCTCCGGCGAACATATTTATGTCGTTTACGAATACGTTCACGGTGCTAATCTCTCCGATTGTTTACGAAATTCACGAAACATTCATTTCACTGTTCTTTCTACATGGATTTCGAGAATGCAGGTTGCGACCGATCTCGCTCATGGACTTGATTACATTCATAATAAAACCGGTTTGAATTTCAATTTTGTTCATAATCATATCAAGAGTAGCGCGATCGTTGTTACCGAACCTGATTTCAATGCTAGGGTTTGTCATTTCGGCGTCGCGCAGCTTTGCGGTGAAGCCGTTGAGGAAAACGATATTGCGACCAAACAATTAGGGGAAATCACGGAGGAAGGTAGATCGAAGGAATTGAGAACCTCCGACGTGCAATTCGAAGGTGTTCGGGGGTATATGTCGCCGGAATTTCAATCTACCGGCGTAGCGACTAAGAAGTCTGATGTTTATGCTTTTGGAGTGGTGATGTTGGAGCTTTTGTCAGGAGAGGAACCGTTGAAGTTTAAATTTGATGAGAAGAGGCGTGATTTTATGAGAATTTCGGTGATTGAATCGGCGAGAGCCGCCGTGGACGGTGGCGACGGGAGTGTGGAAGGGAAACTGAGGATGTGGGTGGATAGGAGATTGAAAGATTCTTTTCCGGTTGATGTTGCTGAGAAATTGACACGTGTAGCGTTGGATTGTGTACACGTGGATCCAGATAAGAGGCCTAATATGGGACGCGTTGCGGGGAAAATATCCACGCTGTATTTGAAGTCAAAGAATTGGTCTGACAACATGAAAATGCCTGATATGTCCTTTTCATTAGGTCCTCGTTGA 1371 0.453 MCKSKMAIDASTPKKSKSKSKSKSTPRSQQTPPPTTSSSSSKPPSTRATSTPTRATSLPKTKTKTSSFSDNPSTSYASTTGSTGFHLSTDTSISSRTSLTSLRDTLPENPNIYDFSEICSATNNFLSKRYSSSTPCWHCTLRGADVIIFQRKFRRKLQTSQLRELLSVVCRSHHVSIIKLLGVSISGEHIYVVYEYVHGANLSDCLRNSRNIHFTVLSTWISRMQVATDLAHGLDYIHNKTGLNFNFVHNHIKSSAIVVTEPDFNARVCHFGVAQLCGEAVEENDIATKQLGEITEEGRSKELRTSDVQFEGVRGYMSPEFQSTGVATKKSDVYAFGVVMLELLSGEEPLKFKFDEKRRDFMRISVIESARAAVDGGDGSVEGKLRMWVDRRLKDSFPVDVAEKLTRVALDCVHVDPDKRPNMGRVAGKISTLYLKSKNWSDNMKMPDMSFSLGPR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04154 456 Gene3D Transferase(Phosphotransferase) domain 1 198 450 - -
Trre12g04154 456 ProSiteProfiles Protein kinase domain profile. 74 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04154 456 SUPERFAMILY Protein kinase-like (PK-like) 153 426 IPR011009 -
Trre12g04154 456 Pfam Protein kinase domain 155 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04154 456 PANTHER OS09G0572100 PROTEIN 1 456 - -
Trre12g04154 456 MobiDBLite consensus disorder prediction 1 82 - -
Trre12g04154 456 Gene3D Phosphorylase Kinase; domain 1 87 196 - -
Trre12g04154 456 MobiDBLite consensus disorder prediction 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04154 Trre-Chr12 56633220 56634590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04154 108 452 Receptor kinase-like Gene Family AT1G51940 31.742 1.31e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre12g04154 Pkinase 5.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04154 - - gmx:100792694 598.586