Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04146 ATGCAGGATCTTTTTCAAGTTAGAAATGCCAATTATTCATCATCAGAAATCTCCAACTTCTTAATTCCTACTTCAAATTCTTTGGAGTATCAAGAACCAAGTAGGTTAATGATGCATCATCAGCAACAGCTACACTATGGTTCATTTCCTCATTCTCCTCAACATAAACAACAGTACTATTCTGAGCTTATAAGTGATTTTGGAAATTGGAAAAACAGAACTGTTCCACATCAAGTCATTGTCACTGATTGGTTTCAAAATAGTGAAACCAATTCTCTTGCATCTGTATATGGTGAAATGCATCAGAATCATTCTCTGCAAGATATTGTCAATAATGCAGGTCAAGGAAATTGTGTAGGAAATGCTTCTGAAAATAAACTTCAACAAAATCAACAAAGCTTATCATTATCACTTACATCAAATGTTTCTCAGTTTCATCAAGAGGGAACTTCAACTTCAAGAGATGAATTTCAAACTATGAAGTATGTGAAGCCTTCAATCATTTCTAGAGATTGTGGAAAATCACTTCAAGACTTGGTGGTTGGAATGATACCAAATTCAAAGATTAATACTATTGGTCCACTTGGTCCTTTTACTGGTTATGCTACTATTCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTAGATGAGTTTTGTTGTTCAAAATTTGTGACAACATTTGATGTTTTAGAAACTGAGGTTGCTTCTAAAGGAAGTAATTATTCATGTTCTTCATCATCTATGTTTAATAGTGTTGATTGGGGGGATAGAAGTAACTTTGGTGTTTCTATGAGGCCAGATTATCAACAGATTAAAGCTAAGCTTATGTGCATGCAAGAGGAGGTCAGCAGGCGATACAAGCAGTACCATCAACAAATGCAAATGGTTTTTGCATCATTTGAATCAGTAACAGGTCTTAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTCAGTAACAAAACACTTCAAGAGCCTAAACAATATTATTTCAAATCAGCTCAAACTTATAAGTGAAGTCTTACGAAATGATCCGTCAATACCGACCACAACCAATAGTGCCAAACTAGTTGACACTAATGTGGCAAGCCTAAGGTGCATGGACCATAGTCTACGAAAGAACAAACTTGATAAGGTTCCAAAAGGTTTTCATGATCCGCAACAACAAAATCTTTGGAAGCCTCAGAGAGGCTTCCCGGAACATGCGGTGGCGATCCTTAGAGCTTGGTTGTTTGAACATTTTCTTCATCCTTATCCAACAGACATCGACAAACACATGTTGGCTACTCAGACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGCTTGTGGAAGCCGATGGTTGAGGAAGTACACATGCTTGACAAAAAAACAACAGGTAACGATGAGAGTTCCAATCCAAACGAGGGAACTTTTGGCATCGTAGGTAGTTCTAACCAGCCTCGAATGGATAAGGCATCGCACAAGTACGTTATGCAGTCAATACCTGAAGACCAAATTCAATATATGGGATTTGGTTCAATATCTATAGATACAAATGCAGAGGAAAATGAAGCGGAACAATGGAGACAAGAGAAGCGGTCGAAATTAGAATGCGGAATGAGTTCAAGAATGGATGGAACATTGATGGATTTTTTACCATATAGACATAGTGGACATGATGTTGTGCAATCACTTGGATTAGATCTGTTTCATTGA 1728 0.3704 MQDLFQVRNANYSSSEISNFLIPTSNSLEYQEPSRLMMHHQQQLHYGSFPHSPQHKQQYYSELISDFGNWKNRTVPHQVIVTDWFQNSETNSLASVYGEMHQNHSLQDIVNNAGQGNCVGNASENKLQQNQQSLSLSLTSNVSQFHQEGTSTSRDEFQTMKYVKPSIISRDCGKSLQDLVVGMIPNSKINTIGPLGPFTGYATILKNSRFLKIAQNLLDEFCCSKFVTTFDVLETEVASKGSNYSCSSSSMFNSVDWGDRSNFGVSMRPDYQQIKAKLMCMQEEVSRRYKQYHQQMQMVFASFESVTGLNSATPYITLALKSVTKHFKSLNNIISNQLKLISEVLRNDPSIPTTTNSAKLVDTNVASLRCMDHSLRKNKLDKVPKGFHDPQQQNLWKPQRGFPEHAVAILRAWLFEHFLHPYPTDIDKHMLATQTGLSRNQVSNWFINARVRLWKPMVEEVHMLDKKTTGNDESSNPNEGTFGIVGSSNQPRMDKASHKYVMQSIPEDQIQYMGFGSISIDTNAEENEAEQWRQEKRSKLECGMSSRMDGTLMDFLPYRHSGHDVVQSLGLDLFH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04146 575 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677|GO:0006355
Trre12g04146 575 FunFam BEL1-like homeodomain protein 9 399 461 - -
Trre12g04146 575 SUPERFAMILY Homeodomain-like 398 461 IPR009057 -
Trre12g04146 575 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 476 - -
Trre12g04146 575 SMART HOX_1 396 460 IPR001356 GO:0003677
Trre12g04146 575 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677
Trre12g04146 575 MobiDBLite consensus disorder prediction 470 491 - -
Trre12g04146 575 Pfam Associated with HOX 204 334 IPR006563 -
Trre12g04146 575 SMART prehox3 199 336 IPR006563 -
Trre12g04146 575 Gene3D - 399 461 - -
Trre12g04146 575 MobiDBLite consensus disorder prediction 466 491 - -
Trre12g04146 575 CDD homeodomain 396 457 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04146 Trre-Chr12 56592610 56595223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04146 139 465 Homeobox Transcription Factor Family AT5G02030 42.470 4.27e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre12g04146 POX 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04146 - - psat:127083522 666.381