Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04141 ATGAAGCGTCAACTCAAAGTTTCTGTTGCACTTGTTATTAGCTTGCTATGGTTTCAGCACTCACTTTGTGCAAATGAACCTTCTGATTCTGGTCTAAACAAGTGGAAATGTAGATGTTCTTTCCGAGTTGACCAGAAAAACTCTATTTCTAATTGTTCCAAGTCATGTGATTGCCATTCAGAGACTGCATCAATATGGACTTGCATATGTGATTCAAATGGCTTTCCTGAAGTTGCAGCAGGAAGCCATAATCCCAATTGCTTTATTGCCTGCAATTGCATCTGGGGAACTGCTAAGATGTCATTGGGTTCAAAGAAACACATTTTGAGCAAGATTTTAATAACCATTATAGTAATGTGTGTTACATGCACAACTATTGCATTTCTAGCCTCAGTTCTATGTTATGTCCGCCGAAGGAAGAGGCATCATCCTATTCAATCACCAATGATCTCGTCATCAGATAAGGAAACAAGTTATAGTAGTACCAGCAACTTCATTAGTCAGAGGACTTCTTTTGTGCCAGATATAAAAGGCGCTATTAGTTCTCCTATAAGTCATATTACACGATGCTTTCAAAAAGCCTCTATCTTGTTTGGGAATCAAAAAGAAACATTTCATGGAAATATTATTCAGTTTTCATTCGCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAACCTTATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCGACTGGAAAATGGTAGTAATGTGGCTGTCAAGCGACTTAAAAACCAAGGAGGGCCTGAAGCAGACACTGAATTTTTCACAGAGATTGAACTATGGTCTAGACTTCACCATTGTCATCTGGTGCCATTGATTGGATACTGCTCGGAATTAAAAGGAAAAACTGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAACGGAAATTTGAGGGACCGTTTAGATGGAGTTTTCGGGAAAAATATGGATTGGTCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGCTTAGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTCCACAGAGATGTCAAATCAACAAACATTCTTCTTGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTTTGGCTAAAGACTTGAGATCTGGTGACCTCGCCAGTTGTTCAGATTCTTCACAAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTATTGAGTCTGATGTCTTCAGTTTCGGTGTGGTTCTTCTCGAGCTTATCAGTGGTCGCCAACCAATCCTTAAATCTGCAGGCAAAGAAGAAAGCCTTGTTGTATGGGCTACTCCTCGGTTATATGACAGTAGGCGAGTAATTACAGAGTTGGCTGATCCACAATTGAAAGGAAACTTCCCAGAAGATGAGGTTTATATAATGGCAAATCTAGCAAAGGAGTGCTTACTGTTGGATCCTGATACTAGACCAACTATGAGTGAAGTTGTTCTAATTCTTTCAAGTATTTCCCGAACCAAATCGAGAAGGAGAAGATACATTCAATTGTGCCTTTTTCAGGAAGCAGATGATGAAGAGAAGCAGAGACAAGCTTCATGGAGAAGATTTCCACCTCATAATTCATTACCACGAGGTACTGACTACAACCTTCGTGTTGAAAAAGAAGATAAAGACGCAGATACAATTTCAACGGAGTACATGAAGAGTTTGATCCTCTTGACTTCAAAAGGCGAGAGCTGGCGTGCATCAGAAGAGGAAATGGTGGACCTATCGGAACCTCGGTTTGAATCATTTTGCATGACAAGCACCAATTTCCCTTGA 1830 0.4022 MKRQLKVSVALVISLLWFQHSLCANEPSDSGLNKWKCRCSFRVDQKNSISNCSKSCDCHSETASIWTCICDSNGFPEVAAGSHNPNCFIACNCIWGTAKMSLGSKKHILSKILITIIVMCVTCTTIAFLASVLCYVRRRKRHHPIQSPMISSSDKETSYSSTSNFISQRTSFVPDIKGAISSPISHITRCFQKASILFGNQKETFHGNIIQFSFAELENATENFSASNLIGLGGSSYVYRGRLENGSNVAVKRLKNQGGPEADTEFFTEIELWSRLHHCHLVPLIGYCSELKGKTVQRLLVFDYMSNGNLRDRLDGVFGKNMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGLAKDLRSGDLASCSDSSQRMKGTFGYFAPEYAIVGRASIESDVFSFGVVLLELISGRQPILKSAGKEESLVVWATPRLYDSRRVITELADPQLKGNFPEDEVYIMANLAKECLLLDPDTRPTMSEVVLILSSISRTKSRRRRYIQLCLFQEADDEEKQRQASWRRFPPHNSLPRGTDYNLRVEKEDKDADTISTEYMKSLILLTSKGESWRASEEEMVDLSEPRFESFCMTSTNFP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04141 609 ProSitePatterns Protein kinases ATP-binding region signature. 230 252 IPR017441 GO:0005524
Trre12g04141 609 FunFam receptor-like serine/threonine-protein kinase NCRK 305 515 - -
Trre12g04141 609 FunFam receptor-like serine/threonine-protein kinase NCRK 198 304 - -
Trre12g04141 609 ProSiteProfiles Protein kinase domain profile. 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04141 609 SUPERFAMILY Protein kinase-like (PK-like) 205 503 IPR011009 -
Trre12g04141 609 Gene3D Phosphorylase Kinase; domain 1 196 304 - -
Trre12g04141 609 Pfam Protein kinase domain 226 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04141 609 PANTHER OS01G0750732 PROTEIN 39 526 - -
Trre12g04141 609 SMART serkin_6 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04141 609 Gene3D Transferase(Phosphotransferase) domain 1 305 527 - -
Trre12g04141 609 CDD STKc_IRAK 230 506 - -
Trre12g04141 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04141 Trre-Chr12 56546090 56550179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04141 1 603 Receptor kinase-like Gene Family AT2G28250 48.355 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Trre12g04141 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04141 - - gmx:100499641 895.19