Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04140 ATGGGATTTGATAATCCAAGATCTGAGAGGTTTGAAGATGATTCTGAGACATCAAAAATTCCTACAACAAATGGAGTTAAGGTTAAATACCACATTGATGGAACACAAATACCTAAACCAAGTTCCAAAAAGGCTCAAAAAAATGCTACAAGGAACAAGTTTTTGAAAACAAGAGTATTATCAAGAGTATTCTCAGAAGACTATGAAAGAGTAAAAAAAAGAGTATTAGTATTAGATCCTAGGGGACAAATCATACAACGTTGGAACAAGATATTTTTAGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCACTGTTCTTTTATTTACCAGTGGTTAGAGACGAAGTTTGCATCGATATTGGAAAAAAACTTGAAGTTGTTCTCACAATTGTTAGATCAGTTGGAGATTTGTTTTACATGATTCAGATTTTTACGAAGTTTCGTACCGCTTATGTTGCTCCTTCTTCCAAGGTTTTTGGTAGAGGAGAACTTGTTCTTACTTATTCTAAGATTGCTGTTAGATACTTCAGCAAAGGTTTTTGGTTAGACTTCATTGCTGCATTGCCTCTTCCTCAGGTTTTGATTTGGATTATTATACCAACACTAAGGGGTTCAACCATGAGAAATACCAAAAATGTCCTTAGATTTTTCATCATTTTCCAATATATTCCAAGGCTATATTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACTGGAGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTAGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGTCAAGAAGCGTGTTGGAAAAGTGTGTGCAATGTGGAGAAATCAAATTGTCAATATGGATTCTTTGATTGCCACAAGGCTAAAGATGCTCTCAGGATCAAATGGTTTAAAGCTAGTAATGTCACAAATTTATGTTCGCCAAATGCTGGTTTTTATCGGTTTGGTATATATGCTGACGCCGTAACTTCTCAAGTTACATCCTCGCCATTCTTCAATAAGTACTTCTTTTGCCTCTGGTGGGGCTTAAGGAATCTCAGTTCTTTGGGACAAGGCCTTCTTACTAGCGCTTTTATTGGAGAAATAATGGTTGCCATTGTTGTGGCAACCCTTGGATTGGTTCTTTTTGCATTGCTGATTGGTAATATGCAGACATACCTTCAATCGATAACTGTTCGCCTAGAAGAGTGGAGAGTGAAAAGAACTGATACAGAACAATGGATGCATCATAGGCAATTACCTTCAGAACTAAGAGAGTCTATTCGTAAATATAACCAATATAAATGGGTGGCTACACGAGGAGTCGAAGAAGAAGATCTTCTCAAAGGACTTCCATTGGATCTTAGGAGAGACATCAAACGCCATCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGACTAAAGCCTGCATTATGCACCGAAGGCACTTACCTTGTTCGCGAAGGCGATCCAGTAAATGAAATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAATGGAGGCCGAGCCGGATTCTTCAACTCATGTCGTATTGGTCCAGGCGATTTCTGTGGCGAAGAACTATTAACATGGGCATTGGATCCAAGACCAAGTGTGATACTTCCTTCTTCAACAAGAACAGTTAAAGCTATCTCAGAAGTAGAAGCATTTGCACTCATAGCTGAAGATCTTAAATTTGTTGCATCTCAATTTAGAAGATTACATAGTAAACAACTTAGGCATAAATTCAGATTTTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTATTCAAGCTGCATGGAGAAGACACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCTAAGGAGAATCTTGTGGTAGCTTCTGAGGCTGAAATAGCAACAAAATATGGAACAAATTTTGTTGTTTATGGAAAAAAGGTTGCAAGGAGTACTAGGAAAGGTGTTAATGTTCATTCCGGGACAAATTCTGGAGTAGTTAGGTCTTTGCAGAAGCCAACAGAACCTGATTTTTCTGATGAATAA 2106 0.3794 MGFDNPRSERFEDDSETSKIPTTNGVKVKYHIDGTQIPKPSSKKAQKNATRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQIIQRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGKKLEVVLTIVRSVGDLFYMIQIFTKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMRNTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWKSVCNVEKSNCQYGFFDCHKAKDALRIKWFKASNVTNLCSPNAGFYRFGIYADAVTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSAFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRAKENLVVASEAEIATKYGTNFVVYGKKVARSTRKGVNVHSGTNSGVVRSLQKPTEPDFSDE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04140 701 CDD CAP_ED 480 611 IPR000595 -
Trre12g04140 701 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Trre12g04140 701 MobiDBLite consensus disorder prediction 1 17 - -
Trre12g04140 701 MobiDBLite consensus disorder prediction 675 690 - -
Trre12g04140 701 Gene3D - 90 406 - -
Trre12g04140 701 Gene3D Helix hairpin bin 408 471 - -
Trre12g04140 701 Pfam Ion transport protein 87 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre12g04140 701 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Trre12g04140 701 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g04140 701 Gene3D Jelly Rolls 478 598 IPR014710 -
Trre12g04140 701 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Trre12g04140 701 SMART cnmp_10 480 611 IPR000595 -
Trre12g04140 701 MobiDBLite consensus disorder prediction 675 701 - -
Trre12g04140 701 ProSiteProfiles IQ motif profile. 616 644 IPR000048 GO:0005515
Trre12g04140 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 48 698 - -
Trre12g04140 701 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Trre12g04140 701 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04140 Trre-Chr12 56526290 56529606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04140 50 701 Ion Channels AT2G28260 74.387 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04140 K05391 - gmx:100786868 1148.65