Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04132 ATGGCAACGGCAACATACCCACCACCCCCACCTTTTTACAGGCTTTACAAAGATTACGCACAAGACCCTCAGTCTGATCCAGAGCCTCCACCACCAATTGAAGGAACTTATATTTGTTTTGGAGGCAGTTACACTACTAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTGCGCCAACTCTATTCTAAAGGACCTAATATTGATTTCAAGAAGGAGCTGAGATCACTTAATGGAGAACTGCAACTACACATATTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAATATGCAAGGAGAGTCGAAGAAATTTCAACCGTGTTCAAAAATTTACATCACCTTTTAAATTCACTGCGTCCTCATCAGGCAAGAGCAACTTTGATTCACATTTTGGAACTTCAGATAGAGCGCCGTAAGCAAGCTGTGGAGGACATAAAAAGGAGGAGAGAAGAAGCTCGAAGACTCCTTAATGAGTCACTGGCAACACTTGGTGGCCAGTAA 507 0.43 MATATYPPPPPFYRLYKDYAQDPQSDPEPPPPIEGTYICFGGSYTTSDVLPSLEEQGVRQLYSKGPNIDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDIKRRREEARRLLNESLATLGGQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04132 168 Coils Coil 130 164 - -
Trre12g04132 168 MobiDBLite consensus disorder prediction 1 34 - -
Trre12g04132 168 Gene3D - 60 159 IPR044888 -
Trre12g04132 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 166 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre12g04132 168 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre12g04132 168 SUPERFAMILY Mediator hinge subcomplex-like 67 159 IPR037212 GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04132 Trre-Chr12 56484459 56487374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Trre12g04132 Med7 3.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04132 K15148 - gmx:100792250 291.967