Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04126 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGTCGGACGAGGTTTTCGATGATGTTCTCCAGTTTTTTGATTTTCCATTGGAAGATGTGGAAGCTAATCCTGCTGAAGAAGATTGGAGTGCTCTCGGAGAGCCGTGTTTTGATGCGTTTTCAGTGGCACCGGAAGGATTGTATGCCAAACCCAAAATTGAGAATCCTCAACTTGGGAATGGCTTCTCCGCTCCTTGCAATGAGATCTCCCCGATGATACAAGTGCCGAGGACTGTTGCACCAATTTATGGAAAAACTCTACCCAACCAGAATGCACCTTTCTATGAAAAAAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTCGAAGGCAGTAGTGCTTCCTCAGGTGAGAATTCCAGCTTTGATCTGCCTGTGATCCCAGTAAAGCGTGCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCCTGTATTCTCGGTTTCTTTCATTGCTAATTCAACGGCATTTCAAAAATATCCTAAGACACCTGCCTCGGAGTCGGATTTAAACAGAGTAAAGAAACAGAGAAAAAGGGACCTCTCTATGCTCTCAGGTGATGCTGAGACAAACAGATCCTCATCACAAGAATCAGCTATCGTTCGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGCCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGACGCCTCTATCCTGAATACCGTCCTGCAAATAGCCCTACTTATGTAGAATCAGTGCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTAGGGGACGTTCATCAAATCTTTCCGGAAATTCCGTAGGAAATTCAGTTGGACAACGTTCTCATGGATCTTATTGA 957 0.4525 MPEDIPNMKDSWFFDKNFNGLSDEVFDDVLQFFDFPLEDVEANPAEEDWSALGEPCFDAFSVAPEGLYAKPKIENPQLGNGFSAPCNEISPMIQVPRTVAPIYGKTLPNQNAPFYEKKVVLQYSPVSVFEGSSASSGENSSFDLPVIPVKRARSKRRRPSSSNPVFSVSFIANSTAFQKYPKTPASESDLNRVKKQRKRDLSMLSGDAETNRSSSQESAIVRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSSNLSGNSVGNSVGQRSHGSY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04126 318 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Trre12g04126 318 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Trre12g04126 318 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Trre12g04126 318 MobiDBLite consensus disorder prediction 181 217 - -
Trre12g04126 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 278 - -
Trre12g04126 318 PANTHER GATA TRANSCRIPTION FACTOR 129 286 - -
Trre12g04126 318 FunFam GATA transcription factor 213 300 - -
Trre12g04126 318 MobiDBLite consensus disorder prediction 295 318 - -
Trre12g04126 318 ProSiteProfiles GATA-type zinc finger domain profile. 222 254 IPR000679 GO:0006355|GO:0043565
Trre12g04126 318 MobiDBLite consensus disorder prediction 297 318 - -
Trre12g04126 318 Gene3D - 219 269 IPR013088 GO:0006355|GO:0008270
Trre12g04126 318 MobiDBLite consensus disorder prediction 188 205 - -
Trre12g04126 318 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04126 Trre-Chr12 56426824 56430946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04126 15 286 C2C2-Gata Transcription Factor Family AT1G08010 38.908 1.32e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre12g04126 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04126 - - psat:127087059 400.208