LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g04125	ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGTCGGACGAGGTTTTCGATGATGTTCTCCAGTTTTTTGATTTTCCATTGGAAGATGTGGAAGCTAATCCTGCTGAAGAAGATTGGAGTGCTCTCGGAGAGCCGTGTTTTGATGCGTTTTCAGTGGCACCGGAAGGATTGTATGCCAAACCCAAAATTGAGAATCCTCAACTTGGGAATGGCTTCTCCGCTCCTGTGAGTGTAATCTCGTGCAATGAGATCTCCCCGATGATACAAGTGCCGAGGACTGTTGCACCAATTTATGGAAAAACTCTACCCAACCAGAATGCACCTTTCTATGAAAAAAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTCGAAGGCAGTAGTGCTTCCTCAGGTGAGAATTCCAGCTTTGATCTGCCTGTGATCCCAGTAAAGCGTGCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCCTGTATTCTCGGTTTCTTTCATTGCTAATTCAACGGCATTTCAAAAATATCCTAAGACACCTGCCTCGGAGTCGGATTTAAACAGAGTAAAGAAACAGAGAAAAAGGGACCTCTCTATGCTCTCAGGTGATGCTGAGACAAACAGATCCTCATCACAAGAATCAGCTATCGTTCGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGCCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGACGCCTCTATCCTGAATACCGTCCTGCAAATAGCCCTACTTATGTAGAATCAGTGCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTAGGGGACGTTCATCAAATCTTTCCGGAAATTCCGTAGGAAATTCAGTTGGACAACGTTCTCATGGATCTTATTGA	972	0.4527	MPEDIPNMKDSWFFDKNFNGLSDEVFDDVLQFFDFPLEDVEANPAEEDWSALGEPCFDAFSVAPEGLYAKPKIENPQLGNGFSAPVSVISCNEISPMIQVPRTVAPIYGKTLPNQNAPFYEKKVVLQYSPVSVFEGSSASSGENSSFDLPVIPVKRARSKRRRPSSSNPVFSVSFIANSTAFQKYPKTPASESDLNRVKKQRKRDLSMLSGDAETNRSSSQESAIVRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSSNLSGNSVGNSVGQRSHGSY	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g04125	323	MobiDBLite	consensus disorder prediction	186	222	-	-
	Trre12g04125	323	ProSitePatterns	GATA-type zinc finger domain.	229	254	IPR000679	GO:0006355\|GO:0043565
	Trre12g04125	323	ProSiteProfiles	GATA-type zinc finger domain profile.	227	259	IPR000679	GO:0006355\|GO:0043565
	Trre12g04125	323	Gene3D	-	224	274	IPR013088	GO:0006355\|GO:0008270
	Trre12g04125	323	FunFam	GATA transcription factor	218	305	-	-
	Trre12g04125	323	MobiDBLite	consensus disorder prediction	193	210	-	-
	Trre12g04125	323	Pfam	GATA zinc finger	229	262	IPR000679	GO:0006355\|GO:0043565
	Trre12g04125	323	CDD	ZnF_GATA	228	275	IPR000679	GO:0006355\|GO:0043565
	Trre12g04125	323	PANTHER	GATA TRANSCRIPTION FACTOR	134	291	-	-
	Trre12g04125	323	MobiDBLite	consensus disorder prediction	300	323	-	-
	Trre12g04125	323	SMART	GATA_3	223	273	IPR000679	GO:0006355\|GO:0043565
	Trre12g04125	323	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	223	283	-	-
	Trre12g04125	323	MobiDBLite	consensus disorder prediction	302	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g04125	Trre-Chr12	56426824	56430946	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g04125	15	291	C2C2-Gata Transcription Factor Family	AT1G08010	40.000	4.09e-54	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Trre12g04125		GATA	1e-16	CL0167