Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04116 ATGGAGGCAGTGAAATTGGCAGAAAAGAACGAGGCGTTTGAAGTTGTGTACTATCCGACGACCGGTGATAATTTTGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAAAGCTCTTTGAAGAATGATCTTGATTCTTCAATAAAGTTGCAGCATGGGACAATCACTAATCTGTGTGCTCCTTCTAATCGTCCATGGCGCATGCTTCAGGTTAAATGGGATAAAACTAAAGTTTCAGAAAATACAATACAAATCAGTCCTTGGCAGATTGAATATAATTCCAACATACCTTCATTGCATCTACAAATGCACATTTCATTCGTCCAATCTTCATAA 366 0.3825 MEAVKLAEKNEAFEVVYYPTTGDNFVVDAKVVEDAMKINWNCGMRVKSSLKNDLDSSIKLQHGTITNLCAPSNRPWRMLQVKWDKTKVSENTIQISPWQIEYNSNIPSLHLQMHISFVQSS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04116 121 Pfam Auxin response factor 3 80 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre12g04116 121 Gene3D - 39 108 - -
Trre12g04116 121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 105 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04116 Trre-Chr12 56353969 56355052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04116 11 111 B3 DNA Binding Superfamily AT2G28350 40.187 2.05e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04116 - - psat:127121983 129.028