Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04115 ATGGCTCTACAACATCAACAACCAAGCCGTGTTGTTTCAAAAATCTGGCAGAGTTGTGCCGGCGACGCCGTCAAAATTCCAAAACTACGCTCCAAAGTTTACTATTTCCCATTAGGGCACTTAGAACATGCAAACCCTACCCCAAACACTGAATCACTTTCACTTATAAATAGTTACCGTCCATTCGTTCCATGCATCATCTCGTCCGTTGATCTCCTCGCCGATCCTCAAACTGACGAGGTCTTCACCAAACTGCTCTTAACTCCCGTCATTGACGGTAGTACACTTGAACCTCCCGAGGTTCATTATGATGATGATGATGATGATGATGATGATGGAGGTGGCGATGTTGTTTCGTCTGGCAAGACTCTTAGTCAATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCAACCAAATGTGCCCAATTGATATTCCCTCCGCTTGATTTGGACGCAGAATTGCCAGGTCAGGAACTCTCCATCACCGATATTCACGGTGCTATATGGGAGTTTTGTCATGTCTACCGTGGGAATCCAAAACGAAACATGTTCACCCATAACTGGAGTCAGTTTGTTGACAAGAAGAAACTCGTTGGTGGTGATTTCCTTATTTTTATGAAAAATTCCGCCGGAAATATCTAG 645 0.4465 MALQHQQPSRVVSKIWQSCAGDAVKIPKLRSKVYYFPLGHLEHANPTPNTESLSLINSYRPFVPCIISSVDLLADPQTDEVFTKLLLTPVIDGSTLEPPEVHYDDDDDDDDDGGGDVVSSGKTLSQSDANNGGAFSVPTKCAQLIFPPLDLDAELPGQELSITDIHGAIWEFCHVYRGNPKRNMFTHNWSQFVDKKKLVGGDFLIFMKNSAGNI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04115 214 SMART B3_2 122 214 IPR003340 GO:0003677
Trre12g04115 214 SUPERFAMILY DNA-binding pseudobarrel domain 121 209 IPR015300 -
Trre12g04115 214 CDD B3_DNA 122 206 IPR003340 GO:0003677
Trre12g04115 214 Gene3D - 120 214 IPR015300 -
Trre12g04115 214 Pfam B3 DNA binding domain 122 208 IPR003340 GO:0003677
Trre12g04115 214 ProSiteProfiles B3 DNA-binding domain profile. 120 214 IPR003340 GO:0003677
Trre12g04115 214 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 210 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre12g04115 214 MobiDBLite consensus disorder prediction 96 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04115 Trre-Chr12 56353258 56353902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04115 15 211 B3 DNA Binding Superfamily AT1G77850 48.731 5.43e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre12g04115 B3 2.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04115 - - mtr:11412789 263.848