Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04112 ATGGATCCAAGTGAAGTTAGAGGTATGAGAGCAATTTTGGCAAGTGAACCTATTGCAATTTTTCATGTTGTTCATTATGGTAATCAAGTATGTGCAGAAGTTGATCCATCTTTTGTCCTTCAATTTTGGAATCAACTAGGATCTCTTTGGTATATCATCGACTATGTTGGAATTTATAATATTATATGGTACAACAAAAATTTTGATCATCCTCTAATAAATCCAAGAAGTTGGAGAGGTCTTCAACATTTTTACAGTTTTCCGAATAATGTGGATGTTACTTTTGCTTACTACGGTCATAAATCCTTCTCTATGATTGAATTTAAAGAAATTTCTGGAACCGAACATATTTCGCCTTTCCATAGCCGAAGTACTTTCCCGTCTGAAACAACTTGGTTTGACATTAACTTGACTGATACAATGATCAACAAAACTAAATTGCTTTTACCTCAATCATTTGGTGAATACGTTAGATTTTATAGCTTCGATGAGTTAAAAGTGTGCACCGATGATGGATATGGTAGCTTATTTGTGGATCCAAATCAAAATGAAATCATCCTAATTGATAATGAAAGCAATCGAAATTATTCGTGCAAGTTACACATTTCAAAAACAAATCCAAACAAAATACACATCGGCAAAGGATGGAGGAAATATGTTAACGATAACAATTTAAAACCATATGATCAGTTAATGTTAGTTTTAAGCAAACCTCCTACGTCTGTTCAAGTTTCTATTGTAGACAGAAATTAA 753 0.3267 MDPSEVRGMRAILASEPIAIFHVVHYGNQVCAEVDPSFVLQFWNQLGSLWYIIDYVGIYNIIWYNKNFDHPLINPRSWRGLQHFYSFPNNVDVTFAYYGHKSFSMIEFKEISGTEHISPFHSRSTFPSETTWFDINLTDTMINKTKLLLPQSFGEYVRFYSFDELKVCTDDGYGSLFVDPNQNEIILIDNESNRNYSCKLHISKTNPNKIHIGKGWRKYVNDNNLKPYDQLMLVLSKPPTSVQVSIVDRN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04112 250 ProSiteProfiles B3 DNA-binding domain profile. 132 250 IPR003340 GO:0003677
Trre12g04112 250 SUPERFAMILY DNA-binding pseudobarrel domain 128 238 IPR015300 -
Trre12g04112 250 Pfam B3 DNA binding domain 136 249 IPR003340 GO:0003677
Trre12g04112 250 Gene3D - 114 250 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04112 Trre-Chr12 56320087 56321890 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre12g04112 B3 5.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04112 - K10520 tpra:123899199 116.701