Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04104 ATGAAGGAAGGTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGTGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACACGCACAATCAAACGTTGATTTTGGTGATTCTTTCAGAATTCCACCACTCATACTCTGTCGTGTTGGTTCTGTGAAATTCTTAGCTGACCCAGAAACAGATGAAGTTTTTTCAAAGATAACATTGATTCCTTTAAGAAATTCAGAGCTTGAAAATGAAGATTCTGATGGTTTTGATGGTAATGTTTCTGAGAATTCAGAAAAGCCTTCATCTTTTGCTAAAACATTAACTCAATCTGATGCAAACAATGGTGGAGGCTTTTCTGTTCCTAGATACTGTGCAGAAACGATTTTTCCACGGCTTGATTACTCGGCTGAACCACCGGTTCAGACGGTGATCGCGAAAGATGTTCACGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGTACACCAAGGAGACACTTGTTAACAACCGGTTGGAGTAGTTTTGTGAACCAGAAAAAACTTGTTGCAGGTGATTCTATAGTGTTTCTGAGAGGTGAAAATGGTCAACTTTATGTTGGGATTCGTCGCGCTAAGAGAGGGATTGTTAATGGATTGGAAACACCTTCTGGATGGAGTTCTGGTAATGGAAGTTGTGGTCTTGGTGTTGGAGGTTTTGGTGGTGCTTTTTCTGTTTTTTTGAGAGAGGAAAATAATAAGATGTTGAGAAATGGGATTGGTGATGGGGGTATTGGTGGTAATTTAGGGGGTGGAAGAGTGAAAGTGAGTAGTGAATCAGTGAAAGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTTAAGGCTGCTATGAGGATTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGAATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCATGTCGTTGATCCTATTCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTAACTTGGGATGAACCGGATTTGCTACACAACGTGAAGCGAGTAAGCCCATGGTTGGTCGAGTTAGTATCGAACATGTCAGTAATTCATCTCTCGCCATTCTCACCACCTAGAAAGAAACTCCGTTTTCCACAACATCCTGATTTCCCTCTCGATGTTGTTCAGTTTCCAATACCGACATTTTCGGGCAACCCTCTAAACCCTTTGTGTTGTGTATCATCTTCGGATCATTATAACGCTCCTGCCGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCACCTTAACAACAACAATAATAAAGTTCAGTTAGGTGTGTTTCCAAAGAATCCTGAGACGACGATTTCTAATGATAAGGGCAAAGAAAGTTTATCATGTTTGTTGACTATAGGAAATTCTCATAAGAGAAGTTTGGAGATAAAATCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTTGGACAACCAATTCTCACTGAACAACAAATCTCTCGAAAAGTTTCTAGCGATGATGTTTTGTTGTCTCAGAATAAGAACAAAGAGAAATGGTTTTTCAGCGATACTACTACTACTACTCAATCTTCAATTTCCAAACAGTTTTCACCAGCAAAATCTTCTACTACTAGTGCGAGTGCCGAGTTTTGTTGGCAACTCGGATTAGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCCTAGACTTGTCATGTGTTGGTTCTTATGAAGAACTATATAGAAAACTTGCTAAAATGTTTGGAATTGAAAGATCTGAGATGTCGAGTCGTGTACTCTACCGTGACGCAACTGGTGCTGTTAAACAAACCGGTGAAGAGCCCTTCAGTGACTTCATGAAGACTGCAAAAAGATTGACAATTCTAATGGATTCAGCTAGCAAAGATACTAGAAGGGTATGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGTATATTTGCTTAA 2130 0.3986 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVGSVKFLADPETDEVFSKITLIPLRNSELENEDSDGFDGNVSENSEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGQLYVGIRRAKRGIVNGLETPSGWSSGNGSCGLGVGGFGGAFSVFLREENNKMLRNGIGDGGIGGNLGGGRVKVSSESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFSGNPLNPLCCVSSSDHYNAPAAGIQGARHAQIGISLSDLHLNNNNNKVQLGVFPKNPETTISNDKGKESLSCLLTIGNSHKRSLEIKSDNNVKRHQFLLFGQPILTEQQISRKVSSDDVLLSQNKNKEKWFFSDTTTTTQSSISKQFSPAKSSTTSASAEFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMSSRVLYRDATGAVKQTGEEPFSDFMKTAKRLTILMDSASKDTRRVCITGTRNAERGLDASNKTGPMSIFA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04104 709 Gene3D - 321 396 - -
Trre12g04104 709 Gene3D - 109 213 IPR015300 -
Trre12g04104 709 FunFam Auxin response factor 109 213 - -
Trre12g04104 709 SMART B3_2 111 213 IPR003340 GO:0003677
Trre12g04104 709 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Trre12g04104 709 FunFam Auxin response factor 322 395 - -
Trre12g04104 709 ProSiteProfiles PB1 domain profile. 597 677 IPR000270 GO:0005515
Trre12g04104 709 MobiDBLite consensus disorder prediction 90 118 - -
Trre12g04104 709 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre12g04104 709 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Trre12g04104 709 SUPERFAMILY DNA-binding pseudobarrel domain 106 212 IPR015300 -
Trre12g04104 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre12g04104 709 CDD B3_DNA 110 211 IPR003340 GO:0003677
Trre12g04104 709 Gene3D - 596 681 - -
Trre12g04104 709 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04104 Trre-Chr12 56272544 56275697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04104 1 679 B3 DNA Binding Superfamily AT4G30080 58.442 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre12g04104 B3 2.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04104 - - gmx:100778135 973.77