Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04099 ATGGCTATGGCTGTTGCACAACAACAAAGGGATAACAGCATTGAGAGACACATTGATTCTTCTGGAAAATATGTGAGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAAGTTTATGTGGAATGCCCCAAACCAAGTTCCATGAGAAGGCAACAACTGATTCAAGAGAATCCGGTTTTGTCCAACATTGAACCTAAGCAAATTAAGGTTTGGTTTCAGAATCGAAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTAACCTTCAGACTGTGAACAGGAGACTTGCTGCAATGAACAAGCTGTTGATGGAGGAAAATGATCGGCTGCAGAAGCAGGTTTCGCAGCTGGTGAATGAGAATGGATTTATGCGCCAGCAAGTGAACACTATCACGGCTGCTGCAAGTGCTGATGGTAGTGGGATTGATTCTGCGGCTGCTACTACTCCTCCGAGTTCCATGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCTGAGGAAACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGAATGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTTGCAATGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTGCTAAGATTGTTGAGCTCCTAAAAGATCGTGCATCTTGGTATCGTGACTGTCGGAGTTCAGAAGTTTTTACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTTCTGCTCGGGATTTCTGGACTCTAAGATATACTACAAACTTGGATAATGGCAGTATTGTGGTTTGTGAAAGGTCGCTCTCTGGTTCTGGTGCTGGCCCTAATGCTGCCGCTGCCTCACAATTTGAGAGGGCTGAAATGCTTCCCAGTGGCTATTTGATTCGACCATGTGAAGGTGGAGGGTCAATCATCCGCATTGTAGACCACCTAAACCTTCAGCCATGGAGTGTGCCAGAAGTGCTGCGACCACTCTACGAATCGTCATCGATGGTTGCTCAGAGATTGACAATTGCAGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGCGAAGTGGTATATAGCATGGGTCGGCAACCTGCTGTTCTGAGAACTTTTAGTCAACGGATGAGCAGAGGTTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGATGCGGAGGGTGTTACTATTTCAGTTAATTCCATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCTCTTTCACTCCTTGGAGGAATTGTCTGCGCAAAAGCTTCCATGTTACTCCAAAACATCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAACATCGCTCAGAGTGGGCTGATTTTAGTGTTGACGCATTTTCTGCTGCATCGCTTAAAGCTGGCTCCTATGGCTATTCTGGAATGAGGTCTATGAGGTTCACCGGCAACCAAGCAATCATGCTGCTTGGACATTCAATTGAACATGAAGAGATGCTAGAAGTTATCCGCCTTGAAGGTCACTCTCCTACTCAAGAAGATTCTTTTGTTTCTAGGGACGTTCATCTCTTACAGCTGTGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGACATGTTTCCTGAAGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTGCCCTGTTGAATTCACCACAGGGTGATAAACAGAACTCAATGGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGCCCCAACACCAACTCATGCCACGGGAGACACTTGTCCTAACAATCGATGTGTTTTGACTGTTGCCTTCCAGTTTCCTTTTGAGACCGGTCTGCAGGATAATGTTGCAGCTATGGCACGTCAGTATATCCGTCGTGTAGTTTCCGCTGTGCAGGCACTTGCCACTGCTATATCTCCATCCAGTGCTAACACTGCCGGTGAAGCAAAACTCTCCCCTGGCTCTCCTGAAGCCCTTACACTAGCTCAATGGATCTGCCAGAGTTACAGTACTTATTTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATCGGGGATATGGTACTGAAACATTTGTGGCTTCATCCTGATGCTATTTTGTGCTGCTCTATGAAGACGGTGCCTGTCTTCATCTTCGCAAACCAGGCTGGCCTCGACATGTTGGAAACAACTCTAGTGGCTCTACAAGACATCACGCTGGATAAAATATTCAATGACTCTGCACGCAAGAATTTGGTTGCATACTTCTCTAAGTTAATGCAAGAGGGATTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGAGGCACGCATCATATGATCAAGCTGTCGCGTGGAAAGTGCATGCTGAAGATACCAGTGTGCACTGTCTCACCTTTTCTTTCATAAATTGGTCATTTATATGA 2526 0.4604 MAMAVAQQQRDNSIERHIDSSGKYVRYTAEQIEALEKVYVECPKPSSMRRQQLIQENPVLSNIEPKQIKVWFQNRRCREKQRKEASNLQTVNRRLAAMNKLLMEENDRLQKQVSQLVNENGFMRQQVNTITAAASADGSGIDSAAATTPPSSMRDANSPAGFLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIFAISQGCNGVAARACGLVSLEPAKIVELLKDRASWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLDNGSIVVCERSLSGSGAGPNAAAASQFERAEMLPSGYLIRPCEGGGSIIRIVDHLNLQPWSVPEVLRPLYESSSMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRMSRGFNDAVNGFNDDGWSVLNCDDAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNITPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYSGMRSMRFTGNQAIMLLGHSIEHEEMLEVIRLEGHSPTQEDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIALLNSPQGDKQNSMAANRTLDLTSGLEVAPTPTHATGDTCPNNRCVLTVAFQFPFETGLQDNVAAMARQYIRRVVSAVQALATAISPSSANTAGEAKLSPGSPEALTLAQWICQSYSTYLGAQLLRSDSLIGDMVLKHLWLHPDAILCCSMKTVPVFIFANQAGLDMLETTLVALQDITLDKIFNDSARKNLVAYFSKLMQEGFACMPAGICMSTMGRHASYDQAVAWKVHAEDTSVHCLTFSFINWSFI 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04099 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 841 IPR044830 GO:0003700
Trre12g04099 841 Gene3D - 199 381 IPR023393 -
Trre12g04099 841 SMART HOX_1 20 86 IPR001356 GO:0003677
Trre12g04099 841 Pfam START domain 165 370 IPR002913 GO:0008289
Trre12g04099 841 CDD homeodomain 23 83 IPR001356 GO:0003677
Trre12g04099 841 Gene3D - 17 89 - -
Trre12g04099 841 CDD bZIP 75 114 - -
Trre12g04099 841 SUPERFAMILY Bet v1-like 164 376 - -
Trre12g04099 841 SUPERFAMILY Homeodomain-like 19 85 IPR009057 -
Trre12g04099 841 SMART START_1 164 374 IPR002913 GO:0008289
Trre12g04099 841 Coils Coil 88 126 - -
Trre12g04099 841 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Trre12g04099 841 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Trre12g04099 841 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Trre12g04099 841 Pfam MEKHLA domain 698 840 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04099 Trre-Chr12 56241539 56245864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04099 1 841 Homeobox Transcription Factor Family AT5G60690 73.145 0.0 1298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g04099 START 3.5e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04099 K09338 - qsu:112038274 1295.8