Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04089 ATGGGAAAAGATGTTGAGGTTCAAGAACAAGGTGCAGAATTTTCAGCTAAGGATTATCAAGATCCACCACCAGCACCTTTATTTGATTTAGGTGAATTTACAAAGTGGTCTTTGTATAGAGCTGTGATAGCTGAATTTGTAGCAACACTTCTCTTTCTTTATATCACTGTTTTAACCATTATTGGTTATAGTAGACAAAGTGATACTACTATTGAAGGTAATACTGAATGTGATGGTGTTGGTGTTTTGGGTATTGCTTGGGCTTTTGGTGGTATGATCTTTATTCTTGTTTACTGCACCGCCGGTATCTCAGGAGGACACATAAATCCTGCTGTGACCTTTGGGCTATTTGTGGGACGCAAGGTGTCTTTAATAAGGGCATTACTATACATAATTGCACAATGTTTAGGTGCAATTTGTGGTGCTGGACTTGCAAAGGGTTTCCAAACATCATACTACAACAGGTACAAAGGAGGTGTTAATATGGTTTCTGAAGGTTATAGCAAAGGTACTGCTTTAGGTGCTGAGATTATTGGTACCTTTGTTTTGGTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAGTGCTAGGGATTCCCATGTTCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCAACAATCCCCGTTACCGGCACCGGCATTAACCCTGCCAGGAGTTTCGGACCGGCCGTTATCTTCAACAACGACAAAGCCTGGGATGATCAGTGGATTTATTGGGTTGGACCATTTATTGGTGCTGCAGTTGCTGCAATCTATCACCAATACATTCTTAGAGGTTCAGCAATTAAGGCTCTTGGATCCTTTAGGAGCAATGCTTAA 864 0.4155 MGKDVEVQEQGAEFSAKDYQDPPPAPLFDLGEFTKWSLYRAVIAEFVATLLFLYITVLTIIGYSRQSDTTIEGNTECDGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRALLYIIAQCLGAICGAGLAKGFQTSYYNRYKGGVNMVSEGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAAIYHQYILRGSAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04089 287 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Trre12g04089 287 Pfam Major intrinsic protein 33 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Trre12g04089 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Trre12g04089 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04089 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Trre12g04089 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 276 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04089 Trre-Chr12 56141008 56142854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04089 1 285 Major Intrinsic Protein MIP AT5G60660 76.491 5.01e-165 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04089 K09872 - gmx:732581 527.324