Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04087 ATGCAATTTCTGTTAAGGATAAGGCTGCTCCTACTCATAATACTTCAGTTGTTATTATACTTCATATTATCTTCTGAAGCTTTGTTAACTTTCAAGGATTCACTTGAAACTGGTCCACAAGGATGTCAAATGCAATGGCCTTGTCTTCACTTCTCTAATGAACCAGGTGGAGTAAAAGCAAATATAGACAGCAACAATGAAACTCCAACACTTACACCATCCCTTAAAGAATCTCAAGTTAAAAAACAAGGAGGAAGAAGCATTGCCGCCATAGTCGGTGCTACTGGTGGAGCCTTAGTCATCATTGTGATAGTGGTGATTGTTTATATCTGCTTGAGAAGATGTGAAAGATTTAAAATACAAACTTCTGATTCTGCTTCTTCTGTTCCATCACAAGCTGTTGAGATGGGAAGAATCAACAGCTCGCAGTATGTTAATGCATTCTCTCCGCATTATATGCAAAACACGAGACTATTAACAATTTTGGAGCTAGAACAAGCTACAGGAAATTTCAGTCAAAGTAGCATCATAGGTGAAGGAAGATTTGGTTTTGTATACAAAGGTTTACTTCAAGATGGATCTTTTGTCGCTATAAAAAGGCGTTTATTTGCTCTTACTCGAGATTTCATCCCAGAGGTTAAGCAGATAGCACAAATTCATCACATTCATCTTGTTAAGCTTATAGGCTATTATGAAGATAACTATCAACAATTACTTGTGTATGAATATCTCTCTAATGGCAATATAGGGAATCATCTTTATGACAATGAAGGTTTACCTATTGGAAAACTTGACTTGCGGCGTAGGGTATCCATCGCCTTAGGCACGTCCAAAGGACTGGAACATCTTCATAGTTTGGTCCCACCTATGTTTCACACAAATTTTAGTACAATAAATGTTCTGTTAGATGAAAATTATACTGCCAAAGTTTCTGATTATGGATTCTGCAAATTGCAAACAAAAGTTGATCAGGCATGTTCATCTTCAAATGTTGACTACTTTCATGATCCAGAGTTGAGCTTATCACAAAACTATTCGGAGCAGAGTGACGTATACAGTTTCGGAGTGTTTTTACTCGAGTTGGTTACTGGTTGTGAAGTCCATAACAGAAACATGTCACACCAAGATGAAAATCTAGTATCTCAGGTAAAAAATAGCAATGTTTTGGACAAGTTTATTGACATAACATTGGGAGAGCAAGAAAAGATTGCTGCTAGAAGAATGATGAAGTTGGCTTTAATATGTGTGGATGTGACTTATAGAAGACCATCAATGGCACATATTGTGCAAGAATTGGAGAGGATACAAAGAGATATTGCTCCTTTGTATTCTGAAATCAATGAGGAGATTGGTGTTGTGACTCTTGGGAGTGAGCTCTTCCAATAA 1386 0.3701 MQFLLRIRLLLLIILQLLLYFILSSEALLTFKDSLETGPQGCQMQWPCLHFSNEPGGVKANIDSNNETPTLTPSLKESQVKKQGGRSIAAIVGATGGALVIIVIVVIVYICLRRCERFKIQTSDSASSVPSQAVEMGRINSSQYVNAFSPHYMQNTRLLTILELEQATGNFSQSSIIGEGRFGFVYKGLLQDGSFVAIKRRLFALTRDFIPEVKQIAQIHHIHLVKLIGYYEDNYQQLLVYEYLSNGNIGNHLYDNEGLPIGKLDLRRRVSIALGTSKGLEHLHSLVPPMFHTNFSTINVLLDENYTAKVSDYGFCKLQTKVDQACSSSNVDYFHDPELSLSQNYSEQSDVYSFGVFLLELVTGCEVHNRNMSHQDENLVSQVKNSNVLDKFIDITLGEQEKIAARRMMKLALICVDVTYRRPSMAHIVQELERIQRDIAPLYSEINEEIGVVTLGSELFQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04087 461 ProSiteProfiles Protein kinase domain profile. 171 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04087 461 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 98 435 IPR047117 -
Trre12g04087 461 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Trre12g04087 461 Gene3D Transferase(Phosphotransferase) domain 1 244 450 - -
Trre12g04087 461 SUPERFAMILY Protein kinase-like (PK-like) 150 442 IPR011009 -
Trre12g04087 461 FunFam receptor-like serine/threonine-protein kinase NCRK 145 243 - -
Trre12g04087 461 Gene3D Phosphorylase Kinase; domain 1 131 243 - -
Trre12g04087 461 Pfam Protein tyrosine and serine/threonine kinase 174 432 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04087 Trre-Chr12 56102260 56105167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04087 98 435 Receptor kinase-like Gene Family AT1G79620 35.262 3.76e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Trre12g04087 PK_Tyr_Ser-Thr 1.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04087 - - psat:127087040 666.381