Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04083 ATGAATTCTCACCAAAAACATGATCATCATCAACAACTTTCTTCTTGCAAAAGAACACTTTCTCTCCCACTTCACAAGGAGAATCTATTAATGGAAAAACCCTACAAAAAATCAGAAGAAGAATCTTGTTCATCATCATCATCAACAATTTCAAAGGAATTTGTTGGAATAAAGATACCATTAACACCAGCAAGTCCAACAGGAAGTAACAAAAGGGTGAATTTTCTTGTGACATCACGTTCAGTTGATGCACCAATTGATAATAATAGTAATTTAGGGTTTATAACAACAAAGGGAAAATCATCATCATCATCAAATAGTAGAAGTAGTATATTACCAAAATTGAATTTCAGGTATAATAGGACAACATCAACATCATCATCAACAACAGTATCAGATATTGAAAAGGGTATAATTGCAAATCAAGAAAGTTCTTTTATAGGTCCTCAAGAAAAGACTTCAATTTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTGCCAGTTGAAGAAATTGGACGTGTTAATACAGAATTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCTTATAGAAGCCAGACTACGATAGCTCGATCTCGTTCTGAGCCTGTAGATACTCAAGAAAAAACCATAAGGAAAATGGATACATTTTTCCGCATTATTCCTTCCACTCCAGGTGTAAAGGAAGCGAAAGAATGGTTAAAAGCATCAAAAGAAAAGGATACTGAAAATGACGGTGATGGTGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTAATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCGTTGGCTCACCAAGAATGTGCTATTAAGTGGTTTAGTATCAGAGGTAACAAGACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTTTTAAGGATCCAAAATGTTCAAACTCAGAATACCGGTGCAAGGCCTCTGGAGGACGATGACTTCAGGGTTTGGCAAGAGTTGCCTGTGCTTGTCATTGTTAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCGTTTTCTTGTGTACTCGGTCTAGTCTCCGCCATGACATCAACAACCATGGTTAGGAACAGGTTCATCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTCTTTGCGCATATATTTTACCCCTTGGTTGGTAAGCAAGCAGTTTTGGCGATCCTTCTTGCATCTTTTGCAGGGTTTGGTGTAATGATGAGCGGAAGTTCAGTTTTTTCGGAGTTACTCAGATGGAGAAGAAGATGGCAGGCTCACTCAGAGCAGCGTCGTGGCTCACAAGTGATGACACAAGAAGGACTATATTCTCAAGGTGCGATTACACCACAATCTAGTCTTCCCAACCAAAGCAATACTACAGTACAAATGCAAAATCAACAGAACTCTAATTCACAGCTGAATTGA 1551 0.3862 MNSHQKHDHHQQLSSCKRTLSLPLHKENLLMEKPYKKSEEESCSSSSSTISKEFVGIKIPLTPASPTGSNKRVNFLVTSRSVDAPIDNNSNLGFITTKGKSSSSSNSRSSILPKLNFRYNRTTSTSSSTTVSDIEKGIIANQESSFIGPQEKTSISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQTTIARSRSEPVDTQEKTIRKMDTFFRIIPSTPGVKEAKEWLKASKEKDTENDGDGGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARPLEDDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFLLVVLFAHIFYPLVGKQAVLAILLASFAGFGVMMSGSSVFSELLRWRRRWQAHSEQRRGSQVMTQEGLYSQGAITPQSSLPNQSNTTVQMQNQQNSNSQLN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04083 516 CDD RING_CH-C4HC3_MARCH 267 315 - -
Trre12g04083 516 SMART ringv_2 266 315 IPR011016 GO:0008270
Trre12g04083 516 PANTHER OS02G0165000 PROTEIN 27 479 - -
Trre12g04083 516 MobiDBLite consensus disorder prediction 493 516 - -
Trre12g04083 516 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Trre12g04083 516 SUPERFAMILY RING/U-box 263 318 - -
Trre12g04083 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 322 IPR013083 -
Trre12g04083 516 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04083 Trre-Chr12 56078042 56081834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04083 264 321 C3H Transcription Factor Family AT2G37950 42.373 2.66e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04083 - - cam:101488558 707.983