Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04081 ATGGCAGAATATAGGAGTTTTTCATTTACTAAAATGATTGGCTGCTGGAGTTGTTTTGGGTTGATAAGAAAGCCGAGACGTACACGTACTAAGCGCGGCATCAAGAATTTTCTCTCCCAAGGGCTATTGACGGATGGAGAAACTGAGTGTGATGAGGTATCATATAGTGGTGACTATACTAGTAACGCAACCAGTGGAGATGATAGTGAGCCGCAAAATTTACCCAATCGTTCCGAGGATATTTTGAACTTTAGAGCAGAGAATGGCATGATTTGTAGGCCTTTTCCTGTTAAGGAGACCGACAAACTTGTTCGATCAGAGGATGAAGACGGGAACAAGATGTTAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTACCGAAGTAGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACGGAAGCTACGAGTTGCTCCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTACTTATCATGAAAATGCTGGAACATCCTAATATAGTTAATCTCATCGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTGCTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCGACAGTGTGCCATAGGTGAAGAAACCGCTAGGAAATACATGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTGCATGGCGATATAAAACCTGATAACCTGTTGATTACTCACGATGGGACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGACTGGTAACGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCGTTTCTCGGAGACACACTTCAAGATACATACGACAGAATAGTCAATAATCCTATAGAAATCCCAGATGACATAAACCCGCAGTTAAAGAATTTAATAGAAGGATTGCTTTGCAAAGACCCAGAACAAAGAATGACATTAGCTGAAGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTGGCGAGTACTGGTGTTGGTGCAAACGCAAGAGTGTGGTGAGTGAAGACCTTGAGGAGAGCAATGTGCTTGTTTGA 1233 0.4225 MAEYRSFSFTKMIGCWSCFGLIRKPRRTRTKRGIKNFLSQGLLTDGETECDEVSYSGDYTSNATSGDDSEPQNLPNRSEDILNFRAENGMICRPFPVKETDKLVRSEDEDGNKMLNEYIREYKIGSGSYGKVALYRSSVDGKHYAIKSFHKSHLRKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRQCAIGEETARKYMRDIVSGLTYLHAHNIVHGDIKPDNLLITHDGTVKIGDFSVSQAFETGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPIEIPDDINPQLKNLIEGLLCKDPEQRMTLAEVAEHVWVIGNDGPIGEYWCWCKRKSVVSEDLEESNVLV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04081 410 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 74 382 - -
Trre12g04081 410 ProSiteProfiles Protein kinase domain profile. 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04081 410 Pfam Protein kinase domain 120 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04081 410 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Trre12g04081 410 FunFam Serine/threonine-protein kinase GRIK2 108 409 - -
Trre12g04081 410 CDD STKc_LKB1_CaMKK 124 379 - -
Trre12g04081 410 SUPERFAMILY Protein kinase-like (PK-like) 114 389 IPR011009 -
Trre12g04081 410 FunFam Serine/threonine-protein kinase Ssp1 112 214 - -
Trre12g04081 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Trre12g04081 410 Gene3D Phosphorylase Kinase; domain 1 112 215 - -
Trre12g04081 410 SMART serkin_6 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04081 410 MobiDBLite consensus disorder prediction 54 76 - -
Trre12g04081 410 Gene3D Transferase(Phosphotransferase) domain 1 216 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04081 Trre-Chr12 56042309 56047540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04081 124 385 CBL-interacting serine-threonine protein kinases AT2G25090 31.734 4.05e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Trre12g04081 Pkinase 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04081 K00908 - gmx:100776013 715.687