Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04074 ATGATGTCTGAAGAAGCTGTTTCTGTTCCATCCAACTTCAGAGCTACCTCAAACTCAAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTTTAGCAGGAACACCAGATCCAGATTCAGAAGTGATTTCTTTGTCACCAAAATCACTTATGACAACGAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGTTACATAGAAGAGGACACAATCTTCCATGGAAGCTTAAGCAGAGAAATCCTCTTGAAGTAATAAAGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTGCACCATGACCCTAGTAGAGCTTTAGGAGATTTAACTGGGATTAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGATTGTGGGACACTATTCTCCAGGAAGGACAGCTTCTTAACACATAGAGCTTTTTGTGAATCCTTGGTAGAAAGAAATGCAAGAATAGGTTCAATTAATCCAGCAGTTTTATCCAACTATGGAAACAATCTTATGATCAACACTCAACCACAAAGAATTCCTCATCAAGGTTTATTTGGGCTTAATCAAGAATTTGGTGGGCCAGGCCCAGAAACATTCATGTCAACAAATTTTCCCAATAATATCAATTTATTCTCATCATCATCAGCAGCATCAGCATCAGGAACAAACTCTGATTTAGAATTAGTCCTCACAAATAATATGAACACATTTGGTAACTCTTCATTATTACCACAAGGACAATGGAATATGAATTACCGTTACAATGATCATCAACAAGAAGATGCATCATTTATAAGTAGTGGGGCTATATCTATGCCTATGTCTATGAATATGATGCATGCTTCTCAAGGAGTACTACTAAAGCTAGAACAACAAGAAGAAGACAAAATTATGCATGCTGATTTGTCTCATTTGTATTCTCACAACCAATTACAAGAAGGTCCAAGTCATCACGTGTCAACAATGGAATCTACAACTACAAATGTTATCATCAATGGTAATAATAATAATAATAATAACAATGTTGCTGCTGCTAATTTCAATAATAATAATAATATTGTTGAAATGAAGAAATTGTTCAACCAAGGAAATGTCTTGCATGATGGAGACAAACATGAATTGAGCTTAACTAGAGATTTTCTTGGTGTTGAATCATTGAAGAGACCTTTCTTACAACAACAGGACGTTCCTAGGTTTAATCCTATAGGATCTGTCATGGACATGCAAAATGATCATTTTGGTGGACACTATGGATAG 1365 0.3641 MMSEEAVSVPSNFRATSNSNPNSNSVKRKRSLAGTPDPDSEVISLSPKSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNPLEVIKKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERNARIGSINPAVLSNYGNNLMINTQPQRIPHQGLFGLNQEFGGPGPETFMSTNFPNNINLFSSSSAASASGTNSDLELVLTNNMNTFGNSSLLPQGQWNMNYRYNDHQQEDASFISSGAISMPMSMNMMHASQGVLLKLEQQEEDKIMHADLSHLYSHNQLQEGPSHHVSTMESTTTNVIINGNNNNNNNNVAAANFNNNNNIVEMKKLFNQGNVLHDGDKHELSLTRDFLGVESLKRPFLQQQDVPRFNPIGSVMDMQNDHFGGHYG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04074 454 SUPERFAMILY beta-beta-alpha zinc fingers 55 153 IPR036236 -
Trre12g04074 454 Gene3D Classic Zinc Finger 129 189 - -
Trre12g04074 454 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Trre12g04074 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 424 IPR031140 -
Trre12g04074 454 Pfam Zinc-finger double-stranded RNA-binding 56 78 IPR022755 -
Trre12g04074 454 SMART c2h2final6 133 153 IPR013087 -
Trre12g04074 454 SMART c2h2final6 98 128 IPR013087 -
Trre12g04074 454 SMART c2h2final6 56 78 IPR013087 -
Trre12g04074 454 MobiDBLite consensus disorder prediction 1 44 - -
Trre12g04074 454 Gene3D Classic Zinc Finger 44 128 - -
Trre12g04074 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Trre12g04074 454 MobiDBLite consensus disorder prediction 1 30 - -
Trre12g04074 454 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Trre12g04074 454 FunFam protein indeterminate-domain 12-like 35 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04074 Trre-Chr12 56010484 56012562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04074 26 197 IDZ Gene Family AT3G45260 84.302 1.83e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04074 zf-C2H2_jaz 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04074 K25870 - gmx:100815213 401.364