Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04072 ATGGAGGGACAACAAAAGGGATCCAAATCTAGTTACATTTTTCCGCCCGGTTTTCGATTCCATCCTTCTGATGAAGAACTTATAGTTCATTACTTGCAAAACAAAATCAAGTCGCGTCCGCTTCCGGCTTCTATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCAATGAAGTCTTTATTTGGGGAGGGAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCGAATAGGACGGCAGCTTCAGGATACTGGAAAGCAACTGGAACTGATAAGCCAATAATTTCTTCTTGTGGATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGTTCAAAGACAGATTGGGTCATGAATGAGTATAGGTTGGTTGACACAACTACAAAATCATTCAGACTAAAAGGTTCGATGCGGTTGGATGACTGGGTATTGTGCCAGGTTCGACATAGAGGCTACTCACTGAAGAATTTATCAGAGAATCAAGAGAATCCTTGCGAGCCAAGCATGCCAGTAAACTTACCGAAAGTGGAAGAACAACTCCCAACAAACACGAACTTTCGAGCAGACATGGTCGCAGATTATCAGTACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGAGTTATACCTCCAACTGAGAACATGCCAAGTTTGAGCTTTGATGGAAGCAAAGGAAATAATCTAACTTCAGATTATGAAGAAGGTTTCAATAAAGTGAATTCTCAAACTTCAATCCCTTCTTTGGAATGTTACTTCAACCCACTGAAAAGGAAATCTATTGAAGATGATGATCAGTTTGAAAATCTTATTTCTTTTAACAGCAGGTTCAACAATGTGAACAAAATAGACAAATCTCCTAGCATCGATTTTAAAGCGCTAAACGAATTAAACTTTGCAGAAAGATACCAGCCGCGATGA 978 0.3947 MEGQQKGSKSSYIFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPMKSLFGEGEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGSKTDWVMNEYRLVDTTTKSFRLKGSMRLDDWVLCQVRHRGYSLKNLSENQENPCEPSMPVNLPKVEEQLPTNTNFRADMVADYQYKDYQIIASILVGGVIPPTENMPSLSFDGSKGNNLTSDYEEGFNKVNSQTSIPSLECYFNPLKRKSIEDDDQFENLISFNSRFNNVNKIDKSPSIDFKALNELNFAERYQPR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04072 325 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Trre12g04072 325 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Trre12g04072 325 PANTHER NAC TRANSCRIPTION FACTOR 56 14 192 - -
Trre12g04072 325 FunFam NAC domain-containing protein 72-like 23 173 - -
Trre12g04072 325 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Trre12g04072 325 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04072 Trre-Chr12 55995563 55997469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04072 10 179 NAC Transcription Factor Family AT1G69490 64.118 3.11e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g04072 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04072 - - gmx:100817193 494.967