Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04071 ATGTCTGTCATCGACATTCTCTTCCGTGTTGACGCCGTTTGCAAAAAATATGACAAATACGACATTGATAAACAGCGTGAACAAAATGCTTACGGTGATGATGCATTTGCACGTGTCTATGCCGTTGTTGATTCCACCATTCAACAAGCTCTCACTAAATCTGAGGCTGCTGCTAAGGAGAGTAACAGGGCAGTTGCTGCGGCTTGGAATGCTGAGGTTCGCAGAGCCAAGGGGCGATTGATGGATGAAGTTCCTAAACTTCGTAAGCTGGCTAATAAGAAGGTTAAAGGACTAACAAGTGAAGACATAGCCATTCGTCAGGATCTTGTTCTTGTATTGCCAGAAAGAATCCAAGCAATACCAGACGGCATTACAGCTGCTGCTAGTCATACTGGAGGATGGGCAGCTACATCAAATCATCCGCATATCAAGTTCGATACACCAGAGGGACCTGTTGACAGTGAATATTTCAATCATAGTGAAGAATCCAGTCAGTTTCGACAAGAATATGAAATGCGCAAGTTGAAACAGGATGAAGGGCTTGATATCATATCAGAAGGATTGGATACTTTGAAAAATCTAGCACTTGATATGAATGAGGAAATGGATCGGCAAGTTCCTTTAATGGATGAAATTGACTCAAAGGTGGATAGGGCAAATAGTGATGTGAGAAACACTAACTTAAGGCTGAAGAAAACTATCACCGAGCTGAGGTCCAGTCGAAATTTCTGCATCGACATCACTCTAATGTGTGTTCTTCTGGGAATCATTATGTATTTATACAAGTAA 789 0.4183 MSVIDILFRVDAVCKKYDKYDIDKQREQNAYGDDAFARVYAVVDSTIQQALTKSEAAAKESNRAVAAAWNAEVRRAKGRLMDEVPKLRKLANKKVKGLTSEDIAIRQDLVLVLPERIQAIPDGITAAASHTGGWAATSNHPHIKFDTPEGPVDSEYFNHSEESSQFRQEYEMRKLKQDEGLDIISEGLDTLKNLALDMNEEMDRQVPLMDEIDSKVDRANSDVRNTNLRLKKTITELRSSRNFCIDITLMCVLLGIIMYLYK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04071 262 SMART tSNARE_6 166 233 IPR000727 -
Trre12g04071 262 CDD SNARE_Qc 176 232 - -
Trre12g04071 262 FunFam Putative syntaxin-71-like 171 232 - -
Trre12g04071 262 Gene3D - 171 232 - -
Trre12g04071 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Trre12g04071 262 Pfam SNARE domain 208 257 IPR000727 -
Trre12g04071 262 SUPERFAMILY SNARE fusion complex 164 232 - -
Trre12g04071 262 PANTHER SYNTAXIN 64 256 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04071 Trre-Chr12 55992758 55994965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04071 1 261 SNARE and Associated Proteins AT3G09740 64.639 9.95e-128 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04071 K08506 - gmx:100777251 414.846