Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04063 ATGGAAATTGATCTGAATGATGAAGTAACTGAAGTTGAGAACAAGAATAAGAACAAGAAGAATAATGTGTCTTGCAATGGTGACTGTGAGAAAAGTGTTTGTGTTTGCACTTTAACTTCTTCTTCTTCTTCACCAACATGTTCATCATCTAGTTCATCTTCAGCTCTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGTCCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAGGGTCATTTGGAACAATTTTCATCTTTGTCTCTTTTTTCTCCATTGGAGATTCCAACTTTTGATCTTCAGCCACAAATCTTTTGTAGGGTTGTTAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTTCCACAGGCAGAGTTAGAAGGGATGTGTTTGGATGGCAAAGAGTGTGAAGGGTTGGAAGCAGATGAAGATGGAAATGGAAAACCAACACCTGCAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTGCATGGTGTGGACTGGAAATTTCGCCATATTTATAGAGGTCAGCCGAGGAGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAGTTAAGACTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTCAATCAATTGTTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCTGTAGCTAATGCTATCTCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAATTCATGCGGATTTTGTTGTCCCTTACCAAAAGTATGTTAAAAGCATTAGGAGTCTGGTGACCACAGGGACAAGATTCAAAATGAAATTTGAAATGGACGAATCTTCGGAAAGAAGGTTTAGCGGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGATGCCTTATGGTCCGATGGGATGAGGATATTGAGACTAATCGACAAGATAGAGTCTCTCCTTGGGAGATTGATCCTTCTAATTCTCTCCCTCCCTTGAACATTCAATCTTCTCGAAGGTTGAAGAAACTCCGGACGGATCTTCAAGCTGACTCCACCAGTCACCTTATCACTGCAGGAGACGGCGGGTTTATGGACTTTGATGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGAAGGCAGAATTCGATATCAATTCTCTAAGTCATTCTCATACTAATCTTGCATCAACTGGAGCAAGAAAGATTTCTTCTGCCGAGTTTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACGAACCGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCAGTTACACAAATTACAACCTGCATCATCAAGCAACAAAACCTAACTTTAACTCTTTAGGATCAGAAATTCTTCAAAATTCCTATTTTCCTTATGGCCAAGGTAGCAGCATTTTGTGTTCTAAACCCACAAATTTCAACCTAGAGAATGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTATCAAGTTTCGCAATCCAAAACGAGCAGAAGCTGCAGGACAATATTTCGGCTGCTACTTCTCTAGGTGCAAACATGAGGATTTCAAATGATGAAAATTTTAAGGGGAAGGTAAATCCTTGCAAACTATTTGGATTTTCTTTGTCTGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTCGGACGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTTTAAGAGATTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGAATGAGTTTTGTGATATGGTATCCAAAATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAATCAGAGTTGTTTGGAACAAACACCACTGATTATGGAGGCTTCAAAGTCATCCTCGGTAGGTCAACCAGATTCTTCTCCAACAGTGGTTAGAATCTAG 2445 0.4049 MEIDLNDEVTEVENKNKNKKNNVSCNGDCEKSVCVCTLTSSSSSPTCSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFSSLSLFSPLEIPTFDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMCLDGKECEGLEADEDGNGKPTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQERPSQELVAKDLHGVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPQSIVGNQSCSPSFLSSVANAISAKSMFHVFYSPRAIHADFVVPYQKYVKSIRSLVTTGTRFKMKFEMDESSERRFSGGIVIGMSDLDPYKWPKSKWRCLMVRWDEDIETNRQDRVSPWEIDPSNSLPPLNIQSSRRLKKLRTDLQADSTSHLITAGDGGFMDFDESIRSPKVLQGQEKTSFMSLYYGCDTVTKKAEFDINSLSHSHTNLASTGARKISSAEFTRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYNLHHQATKPNFNSLGSEILQNSYFPYGQGSSILCSKPTNFNLENVPFNTPSAQIGTLKNEVGLSSFAIQNEQKLQDNISAATSLGANMRISNDENFKGKVNPCKLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLVGRAVDLSRLSSYNDLVSELERLFGMEGLLRDSDKGWRILYTDSENDIMVVGDDPWNEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPTVVRI 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04063 814 Pfam Auxin response factor 302 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre12g04063 814 Pfam AUX/IAA family 676 770 IPR033389 -
Trre12g04063 814 FunFam Auxin response factor 339 412 - -
Trre12g04063 814 Gene3D - 682 775 - -
Trre12g04063 814 Gene3D - 340 412 - -
Trre12g04063 814 SUPERFAMILY CAD & PB1 domains 689 766 - -
Trre12g04063 814 CDD B3_DNA 174 276 IPR003340 GO:0003677
Trre12g04063 814 Pfam B3 DNA binding domain 176 277 IPR003340 GO:0003677
Trre12g04063 814 FunFam Auxin response factor 681 775 - -
Trre12g04063 814 SUPERFAMILY DNA-binding pseudobarrel domain 170 285 IPR015300 -
Trre12g04063 814 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 60 775 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre12g04063 814 ProSiteProfiles B3 DNA-binding domain profile. 176 278 IPR003340 GO:0003677
Trre12g04063 814 SMART B3_2 176 278 IPR003340 GO:0003677
Trre12g04063 814 ProSiteProfiles PB1 domain profile. 686 768 IPR000270 GO:0005515
Trre12g04063 814 Coils Coil 2 22 - -
Trre12g04063 814 Gene3D - 173 278 IPR015300 -
Trre12g04063 814 FunFam Auxin response factor 174 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04063 Trre-Chr12 55905395 55910324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04063 57 814 B3 DNA Binding Superfamily AT5G60450 58.388 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre12g04063 AUX_IAA 7.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04063 - - gmx:100812909 1249.96