Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04062 ATGGAAATTGATCTGAATGATGAAGTAACTGAAGTTGAGAACAAGAATAAGAACAAGAAGAATAATGTGTCTTGCAATGGTGACTGTGAGAAAAGTGTTTGTGTTTGCACTTTAACTTCTTCTTCTTCTTCACCAACATGTTCATCATCTAGTTCATCTTCAGCTCTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGTCCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAGGGTCATTTGGAACAATTTTCATCTTTGTCTCTTTTTTCTCCATTGGAGATTCCAACTTTTGATCTTCAGCCACAAATCTTTTGTAGGGTTGTTAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTTCCACAGGCAGAGTTAGAAGGGATGTGTTTGGATGGCAAAGAGTGTGAAGGGTTGGAAGCAGATGAAGATGGAAATGGAAAACCAACACCTGCAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTGCATGGTGTGGACTGGAAATTTCGCCATATTTATAGAGGTCAGCCGAGGAGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAGTTAAGACTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTCAATCAATTGTTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCTGTAGCTAATGCTATCTCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAATTCATGCGGATTTTGTTGTCCCTTACCAAAAGTATGTTAAAAGCATTAGGAGTCTGGTGACCACAGGGACAAGATTCAAAATGAAATTTGAAATGGACGAATCTTCGGAAAGAAGGTTTAGCGGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGATGCCTTATGGTCCGATGGGATGAGGATATTGAGACTAATCGACAAGATAGAGTCTCTCCTTGGGAGATTGATCCTTCTAATTCTCTCCCTCCCTTGAACATTCAATCTTCTCGAAGGTTGAAGAAACTCCGGACGGATCTTCAAGCTGACTCCACCAGTCACCTTATCACTGGAGACGGCGGGTTTATGGACTTTGATGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGAAGGCAGAATTCGATATCAATTCTCTAAGTCATTCTCATACTAATCTTGCATCAACTGGAGCAAGAAAGATTTCTTCTGCCGAGTTTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACGAACCGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCAGTTACACAAATTACAACCTGCATCATCAAGCAACAAAACCTAACTTTAACTCTTTAGGATCAGAAATTCTTCAAAATTCCTATTTTCCTTATGGCCAAGGTAGCAGCATTTTGTGTTCTAAACCCACAAATTTCAACCTAGAGAATGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTATCAAGTTTCGCAATCCAAAACGAGCAGAAGCTGCAGGACAATATTTCGGCTGCTACTTCTCTAGGTGCAAACATGAGGATTTCAAATGATGAAAATTTTAAGGGGAAGGTAAATCCTTGCAAACTATTTGGATTTTCTTTGTCTGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTCGGACGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTTTAAGAGATTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGAATGAGTTTTGTGATATGGTATCCAAAATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAATCAGAGTTGTTTGGAACAAACACCACTGATTATGGAGGCTTCAAAGTCATCCTCGGTAGGTCAACCAGATTCTTCTCCAACAGTGGTTAGAATCTAG 2442 0.4046 MEIDLNDEVTEVENKNKNKKNNVSCNGDCEKSVCVCTLTSSSSSPTCSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFSSLSLFSPLEIPTFDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMCLDGKECEGLEADEDGNGKPTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQERPSQELVAKDLHGVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPQSIVGNQSCSPSFLSSVANAISAKSMFHVFYSPRAIHADFVVPYQKYVKSIRSLVTTGTRFKMKFEMDESSERRFSGGIVIGMSDLDPYKWPKSKWRCLMVRWDEDIETNRQDRVSPWEIDPSNSLPPLNIQSSRRLKKLRTDLQADSTSHLITGDGGFMDFDESIRSPKVLQGQEKTSFMSLYYGCDTVTKKAEFDINSLSHSHTNLASTGARKISSAEFTRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYNLHHQATKPNFNSLGSEILQNSYFPYGQGSSILCSKPTNFNLENVPFNTPSAQIGTLKNEVGLSSFAIQNEQKLQDNISAATSLGANMRISNDENFKGKVNPCKLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLVGRAVDLSRLSSYNDLVSELERLFGMEGLLRDSDKGWRILYTDSENDIMVVGDDPWNEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPTVVRI 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04062 813 Pfam Auxin response factor 302 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre12g04062 813 FunFam Auxin response factor 339 412 - -
Trre12g04062 813 Gene3D - 173 278 IPR015300 -
Trre12g04062 813 Gene3D - 340 412 - -
Trre12g04062 813 ProSiteProfiles PB1 domain profile. 685 767 IPR000270 GO:0005515
Trre12g04062 813 Pfam B3 DNA binding domain 176 277 IPR003340 GO:0003677
Trre12g04062 813 CDD B3_DNA 174 276 IPR003340 GO:0003677
Trre12g04062 813 Pfam AUX/IAA family 675 769 IPR033389 -
Trre12g04062 813 FunFam Auxin response factor 174 278 - -
Trre12g04062 813 SUPERFAMILY DNA-binding pseudobarrel domain 170 285 IPR015300 -
Trre12g04062 813 Gene3D - 681 774 - -
Trre12g04062 813 ProSiteProfiles B3 DNA-binding domain profile. 176 278 IPR003340 GO:0003677
Trre12g04062 813 SMART B3_2 176 278 IPR003340 GO:0003677
Trre12g04062 813 SUPERFAMILY CAD & PB1 domains 688 765 - -
Trre12g04062 813 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 60 774 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre12g04062 813 Coils Coil 2 22 - -
Trre12g04062 813 FunFam Auxin response factor 680 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04062 Trre-Chr12 55905395 55910324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04062 57 813 B3 DNA Binding Superfamily AT5G60450 58.831 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre12g04062 AUX_IAA 7.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04062 - - gmx:100812909 1245.34