Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04053 ATGGAGAATGAGTACACAAACAAAATTACAAACACATCAATTTCCTCTCCTCTATTTTTTAATTCTTCAACTTCCTCACAACCAACTTTGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTGCTGAAAAATGTGTATTGGCACCTTATTTTCCTCCCACTCAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCTAGCAACATCATTAAGATCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGTAGCATGGTTTATGAAGCTAGTGCAAGAATTAGAGACCCTGTATATGGATCTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAACTTCAAGCACAATTAGCTAAGTCACAAGCTGAACTTATTAACATGCAATTGCAACAATCCAATCTACTATCTCTTATTTGCATAGAAACTCCAAATGAATCATCACCACAAGAATCAGTTGACAATTTCATTTCAAGTCCTAACTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGAGGAGAACACTAGCCCAAATTCATTGTGGGAGCCACTATGGACATGA 606 0.3828 MENEYTNKITNTSISSPLFFNSSTSSQPTLAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTQPSKFTTAHRVFGASNIIKILQELPESQRADAVSSMVYEASARIRDPVYGSAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLSLICIETPNESSPQESVDNFISSPNYSSDYQNNLNFFEENTSPNSLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04053 201 Coils Coil 124 144 - -
Trre12g04053 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 159 - -
Trre12g04053 201 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Trre12g04053 201 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04053 Trre-Chr12 55846880 55849307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04053 34 201 AS2 family AT2G28500 65.405 1.71e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g04053 LOB 4.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04053 - - gmx:100819336 285.804