Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04048 ATGTCGTCGTCCGAACATAGCATGGAGAAGGTTGCAGGCAAAGGCGTCCAGAAAGACGTCGGTGGTGAGGATCCGTCCAAGCTTCCAAAACTGTCGTCGTCGATCCAGGAAGACGTCGGTGGTACCCAATCCTACGTTGATGAAATTAATAACTCTTTCGAAGAATTCGTCAAAAAATATACAAGCCCTCCGTATACGAATCCTCGTAATATCCAAACTTTGAATACCAACCATCCTGATCCTGTTTCTGGTGTTAAAATTTGTAAGGCTTGTGGTAGATACTACAGTGACAGAAAGGCTGTTGACTTTCCTCGGGGTACTCTTTTTAATCCTAAATATCGTTTTTTAACGGCTATTCCGGGCATGCTAGTACCTTCCTTCGCGTGGCCTTTTGTGGACGAGATGACTGCTAAGTCCGACGATAAAACTCTTGTTGTAAGCCATATCACACGTGAAATAAGGAAGGAAACTGATTTCCTTGAGCTTTTTGAGCGTTTCGGTGAGGTCAGCAGTGTCAAGCTTGCCCCTCTTGATCCAGAGGGTACCCGTCGTGGGGGATTTGGCTTTGTTACATTCGTCAACAAGGAGGATGCTCAGAAGGCTATGGACACACTCAATGCCTCTCCGCTTGGCCGGGATAATCGCACCCTTGCACTTGATTGGGCCTCAACCTTAAAAAAACCAACCTAA 690 0.4623 MSSSEHSMEKVAGKGVQKDVGGEDPSKLPKLSSSIQEDVGGTQSYVDEINNSFEEFVKKYTSPPYTNPRNIQTLNTNHPDPVSGVKICKACGRYYSDRKAVDFPRGTLFNPKYRFLTAIPGMLVPSFAWPFVDEMTAKSDDKTLVVSHITREIRKETDFLELFERFGEVSSVKLAPLDPEGTRRGGFGFVTFVNKEDAQKAMDTLNASPLGRDNRTLALDWASTLKKPT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04048 229 MobiDBLite consensus disorder prediction 11 25 - -
Trre12g04048 229 SUPERFAMILY RNA-binding domain, RBD 130 225 IPR035979 GO:0003676
Trre12g04048 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 224 IPR000504 GO:0003723
Trre12g04048 229 Gene3D - 132 228 IPR012677 -
Trre12g04048 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 137 223 - -
Trre12g04048 229 SMART rrm1_1 143 220 IPR000504 GO:0003723
Trre12g04048 229 MobiDBLite consensus disorder prediction 1 40 - -
Trre12g04048 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04048 Trre-Chr12 55820426 55821465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04048 134 223 Eukaryotic Initiation Factors Gene Family AT3G11400 40.000 4.38e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04048 K03248 - tpra:123898674 95.9005