Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04047 ATGATGATAGCTCTTGATGTTGCTAAGGGTCTTGCATATCTTCATAGTCATGAAGTGAACATTATACTTGGAGACTTCGAAACTTCTAAAATCTTGATTGATTCTAATCACAATGCAAAACTATATAATTTTGCGATGGTAAGATCATATGAAGATGAGATCGACCCAGATATGATAGATATGCAACGCTCCACACCATACACGGCACCAGGGTGTAAAGGTCGCCTAACGAAAAACGGTGATGTATACAGTTTTGGCGTTGTTCTACTCGAAATCATGTTAGGAAAACGTGCATATGATAGTACTAGGATGCCATTTCGGAAACGTAATTTAGTTGAATGGGCCAAGCCATTACTTTTACTCAACCATAATACCTCTAAAACCATGGATGATCTTATAGAAGGCCAATATTTATTGCCTGAAGCAACGAAAGTAGCTCGCATTGTAATTCAATGCCTGTGTTTCGGAGAAAATAGACCAAACATGGATGAAGTGGTGAGATCATTGAAGCAAATTCAGGATTCCAATGACACAATTTGGTTTGAATGA 549 0.3789 MMIALDVAKGLAYLHSHEVNIILGDFETSKILIDSNHNAKLYNFAMVRSYEDEIDPDMIDMQRSTPYTAPGCKGRLTKNGDVYSFGVVLLEIMLGKRAYDSTRMPFRKRNLVEWAKPLLLLNHNTSKTMDDLIEGQYLLPEATKVARIVIQCLCFGENRPNMDEVVRSLKQIQDSNDTIWFE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04047 182 SUPERFAMILY Protein kinase-like (PK-like) 2 170 IPR011009 -
Trre12g04047 182 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
Trre12g04047 182 Pfam Protein tyrosine and serine/threonine kinase 3 112 IPR001245 GO:0004672|GO:0006468
Trre12g04047 182 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04047 182 PANTHER OS01G0588500 PROTEIN-RELATED 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04047 Trre-Chr12 55813570 55816656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04047 1 173 Receptor kinase-like Gene Family AT4G02010 36.517 4.16e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre12g04047 PK_Tyr_Ser-Thr 1.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04047 - - var:108326804 171.4