Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04043 ATGGATCCTTCTTGTGGACAAACTCAGCAAATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGAAGAACAAGAAAGAAAACCAAAACCTCAGCCAGAACATGCTTTGAATTGTCCAAGATGTAACTCAACCAACACCAAATTTTGTTACTACAACAATTATAGTCTTACTCAACCAAGATACTTTTGCAAATCTTGTAGAAGATATTGGACAAAAGGTGGAACATTAAGGAATGTTCCGGTCGGTGGTGGATGTCGAAAAAACAAAAGATCATCTTCATCTTCATCTTCAAAGAGGGTTCAAGATCAAAACCAAACATTCACACCTAATCTTAACCCTTTTAATAATCTTCCTCTTTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTTGCTAGGCTTCAAAAACAATCATGTGGACAAATGGGTTATGATGATAATGATCTTTCAATTTTGGGTAATCCTCAAAATCATGGATTTATGGATGCAATTAGAAGTGGGTTATTTCTTGGAAATGGATTACATTATAATAATAATGTTCAAAATATGTATGGTGGGTATGGAAATGGAGGAGATAATGGTGAAGTGAATAGTTGCAACAACAACAATAACAATGGTTGTGGGGTTAGTGAAGAGATGATGTTTCCTTATGATCAAGAAATGAACAATTGCATTGCAACAAGTAACATGAAGCAAGAACAAAGTGAAAGTAAGGTTTTTGGTGGTTTTCCATGGCAACTAAATGGTGGAACAAACATGGTTGAGCTTGAATCAACAAGAGCTAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGACTTCTTCATAGTCCCCTAATGTAG 861 0.3531 MDPSCGQTQQMSSQSSMENMLGCSKEEQERKPKPQPEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRVQDQNQTFTPNLNPFNNLPLSSYDHNSNDFALAFARLQKQSCGQMGYDDNDLSILGNPQNHGFMDAIRSGLFLGNGLHYNNNVQNMYGGYGNGGDNGEVNSCNNNNNNGCGVSEEMMFPYDQEMNNCIATSNMKQEQSESKVFGGFPWQLNGGTNMVELESTRASWNNGFTSPWQGLLHSPLM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04043 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 226 IPR045174 GO:0003700|GO:0006355
Trre12g04043 286 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Trre12g04043 286 MobiDBLite consensus disorder prediction 23 37 - -
Trre12g04043 286 MobiDBLite consensus disorder prediction 1 22 - -
Trre12g04043 286 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Trre12g04043 286 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Trre12g04043 286 MobiDBLite consensus disorder prediction 85 118 - -
Trre12g04043 286 MobiDBLite consensus disorder prediction 91 118 - -
Trre12g04043 286 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04043 Trre-Chr12 55785311 55787027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04043 38 286 C2C2-Dof Transcription Factor Family AT2G28510 47.710 1.23e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre12g04043 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04043 - - gmx:778106 307.76