Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04041 ATGTTTCCCGGGAAAATGGAACAGTTTATTGATAACTTACCGCCGATGGATCTGATGCGATCGGAGAAGATGACGTTTGTTCAACTAATTATTCCGGCTGAATCTGCTCACCGTGCAATTTCATATTTAGGTGAACTCGGTCTTCTTCAATTCCGAGACTTAAATGCTGACAAAAGCCCTTTCCAGAGAACGTTTGTTAATCAGGTAAAGCGATGTGCGGAAATGTCAAGAAAGCTACGATTTTTCAAGGATCAAGTCAATAAAGCTGGTCTATTGTCGTCTTCTCGTACTCTATTGCAACCGGACATTGACTTGGAGGATTTAGAGGTACATCTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCCAATAGTGACAAACTCCGGCAATCATATAATGAACTTTTGGAATTCAAGATTGTACTGCAAAAGGCATGTGGTTTTCTTATTTCAAGTCATGGCCGTGCTGTTTCAGGCGAGATAGAACTACAAGATAATGTATACTCAAATGATGACTATGCCGATACAGCATCTTTACTTGAACAGGAAATGAGACCCCAACCATCAAATACATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGCTCTTAGGTTTGAAAGGATGTTATTTCGTGCTACAAGAGGCAATATGTTTTTCAATCAGGCACCAGCTGGAGAGCAAATCATGGATCCTGTTTCAACTGAGATGATCGAGAAAACAGTATTCGTTGTGTTTTTCTCCGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGCGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATAATTAAGCATGGGCAAATAACTAGGGAGGTTACCTCACGTCTTACTGACTTAGAGGCAACTTTGGATGCGGGGATTAGGCACCGGAACAAGGCGCTAGCTTCTATTGCAGACCATCTAGCAAAATGGATGGACCTGGTAAGAAGAGAGAAGGCCGTGTATGATACATTGAATATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGCAGAGGGATGGTGCCCTATGATTGCAAAAACACAGATGCAGGAGGTATTGCAACGTGCAACTTTTGATAGCAGTTCTCAAGTTGGCATAATCTTCCATCAAATGGATGCAGTGGAAGCCCCACCTACATATTTTAAGACCAACACTTTCACAAATCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTGTTGTATTTCCCTTCCTATTTGCTATGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACATGAAAACAAGCTCAGTACACAGAAGCTTGGAAGCTTCATGGAGATGCTATTTGGTGGGCGCTATGTGATTCTTTTGATGTCACTGTTTTCAATCTATTGTGGGTTAATCTACAATGAGTTCTTTTCTGTTCCTTTTCACATATTTGGCCCATCAGCATTTCGATGCCGTGATACGTCATGCAGGGATGCATATACTATTGGCTTAGTCAAATACCGTGATCCATACCCATTTGGTGTGGATCCTAGCTGGCGTGGAAGTCGTTCAGAGTTGGCCTTTCTGAACTCTATGAAGATGAAAATGTCCATTCTGTTTGGTGTGGCACATATGAATTTGGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGCTCACTGGATATAAGGTACCAATTTGTGCCACAGATGATTTTCCTTAACAGTCTGTTTGGATATCTTTCCCTTCTCATCATTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTGATGATATATATGTTTTTAAGCCCTACGGACGAACTTGGTGAGAACCAGTTGTTCTGGGGCCAACGACCACTTCAAATTGTGTTATTGCTTTTGGCTTTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATACCGAGAGATTTCAAGGTCGTAGTTATGGTATTTTGAATACTTCTGAAATGGATCTTGAGGTGGAGCCCGATTCTGCCAGGCAACATCATCATGAAGAATTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATCCACTCCATCGAGTTTGTTTTAGGTTCAGTTTCAAATACGGCATCATATCTTCGACTTTGGGCATTAAGTTTGGCTCACTCGGAACTTTCTACCGTTTTCTATGAGAAAGTGTTGCTTCTTGCTTGGGGGTATGACAATCTCGTGATTAAGTTAGTGGGGCTAACTGTTTTTGCCTTTGCAACGGCCTTTATACTACTTATGATGGAGAGTCTCAGTGCTTTTCTTCATGCCCTGCGACTTCACTGGGTAGAATTTCAAAATAAATTCTACCACGGTGATGGCTACAAGTTCAAGCCCTTTTCATTTGCTTCTTTAACAGAGGATGATGATTGA 2478 0.4052 MFPGKMEQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQVNKAGLLSSSRTLLQPDIDLEDLEVHLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLISSHGRAVSGEIELQDNVYSNDDYADTASLLEQEMRPQPSNTSGLRFISGIICKSKALRFERMLFRATRGNMFFNQAPAGEQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDIIKHGQITREVTSRLTDLEATLDAGIRHRNKALASIADHLAKWMDLVRREKAVYDTLNMLNFDVTKKCLVAEGWCPMIAKTQMQEVLQRATFDSSSQVGIIFHQMDAVEAPPTYFKTNTFTNPYQEIVDAYGVARYQEANPAVYTTVVFPFLFAMMFGDWGHGICLLLGALVLIAHENKLSTQKLGSFMEMLFGGRYVILLMSLFSIYCGLIYNEFFSVPFHIFGPSAFRCRDTSCRDAYTIGLVKYRDPYPFGVDPSWRGSRSELAFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDELGENQLFWGQRPLQIVLLLLALIAVPWMLFPKPFILKKLHTERFQGRSYGILNTSEMDLEVEPDSARQHHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIKLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLTEDDD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04041 825 PANTHER VACUOLAR PROTON ATPASES 18 824 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre12g04041 825 Pfam V-type ATPase 116kDa subunit family 42 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre12g04041 825 Coils Coil 105 132 - -
Trre12g04041 825 PIRSF ATP6V0A1 14 825 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04041 Trre-Chr12 55737379 55747470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04041 6 818 Primary Pumps ATPases(2) AT2G28520 80.491 0.0 1362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04041 K02154 - gmx:100776037 1502.65