Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04036 ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCAAATTCATCAATCGTGAATGCGGAAGGGTCAAGTAACGTTACCGGAGATGAAGACTCGTGTTCAACATGCGCCGGTGATGGTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAGGAGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGGGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCGATGGATCATCATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATCAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGAGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGACGCAGTGACTAACTTTGACCCAAGTACATATGAAAACGAGGTGAAACCAGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACCTAAGGAAAACAGAGGGTATAGTCAATTTCAGGCTGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCAGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGCAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGACTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCAAGTTAAGTCCTCACAGGCACCACCATAG 1374 0.4389 MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTCAGDGFTFNFGILKVEGGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHHRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAALKCNGRDAVTNFDPSTYENEVKPEGGSHNLDLNLGMATPGHGPKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDQSLKKLVVTEQRPSMWNATFSSFFPNEQERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYQVKSSQAPP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04036 457 MobiDBLite consensus disorder prediction 22 44 - -
Trre12g04036 457 Gene3D AP2/ERF domain 229 273 IPR036955 GO:0003700|GO:0006355
Trre12g04036 457 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Trre12g04036 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 313 - -
Trre12g04036 457 MobiDBLite consensus disorder prediction 23 44 - -
Trre12g04036 457 MobiDBLite consensus disorder prediction 118 138 - -
Trre12g04036 457 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 SMART rav1_2 230 278 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 SUPERFAMILY DNA-binding domain 229 273 IPR016177 GO:0003677
Trre12g04036 457 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 CDD AP2 229 274 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Trre12g04036 457 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Trre12g04036 457 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04036 Trre-Chr12 55698607 55702395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04036 1 416 AP2-EREBP Transcription Factor Family AT5G60120 45.934 1.54e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre12g04036 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04036 K09284 - gmx:100777102 658.677