Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04035 ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCAAATTCATCAATCGTGAATGCGGAAGGGTCAAGTAACGTTACCGGAGATGAAGACTCGTGTTCAACATGCGCCGGTGATGGTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAGGAGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGGGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCGATGGATCATCATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATCAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGAGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGACGCAGTGACTAACTTTGACCCAAGTACATATGAAAACGAGGTGAAACCAGAAGGTATTAATGAGGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACCTAAGGAAAACAGAGGGTATAGTCAATTTCAGGCTGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCAGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGACTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCAAGTTAAGTCCTCACAGGCACCACCATAG 1383 0.4375 MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTCAGDGFTFNFGILKVEGGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHHRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAALKCNGRDAVTNFDPSTYENEVKPEGINEGGSHNLDLNLGMATPGHGPKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDQSLKKLVVTEQRPSMWNATFSSFFPNEERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYQVKSSQAPP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04035 460 MobiDBLite consensus disorder prediction 22 44 - -
Trre12g04035 460 MobiDBLite consensus disorder prediction 23 44 - -
Trre12g04035 460 MobiDBLite consensus disorder prediction 118 138 - -
Trre12g04035 460 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 SMART rav1_2 230 278 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 SUPERFAMILY DNA-binding domain 229 273 IPR016177 GO:0003677
Trre12g04035 460 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 312 - -
Trre12g04035 460 CDD AP2 229 274 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Trre12g04035 460 Gene3D AP2/ERF domain 229 273 IPR036955 GO:0003700|GO:0006355
Trre12g04035 460 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Trre12g04035 460 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Trre12g04035 460 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04035 Trre-Chr12 55698607 55702395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04035 1 419 AP2-EREBP Transcription Factor Family AT5G60120 45.969 2.89e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g04035 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04035 K09284 - gmx:100777102 674.47