Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04033 ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCAAATTCATCAATCGTGAATGCGGAAGGGTCAAGTAACGTTACCGGAGATGAAGACTCGTGTTCAACATGCGCCGGTGATGGTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAGGAGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGGGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCGATGGATCATCATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATCAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGAGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGACGCAGTGACTAACTTTGACCCAAGTACATATGAAAACGAGGTGAAACCAGAAGGTATTAATGAGGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACCTAAGGAAAACAGAGGGTATAGTCAATTTCAGGCTGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCAGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGACTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCAAGTTAAGTCCTCACAGGCACCACCATAG 1428 0.4356 MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTCAGDGFTFNFGILKVEGGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHHRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGRDAVTNFDPSTYENEVKPEGINEGGSHNLDLNLGMATPGHGPKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDQSLKKLVVTEQRPSMWNATFSSFFPNEERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYQVKSSQAPP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04033 475 MobiDBLite consensus disorder prediction 22 44 - -
Trre12g04033 475 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
Trre12g04033 475 SUPERFAMILY DNA-binding domain 229 288 IPR016177 GO:0003677
Trre12g04033 475 MobiDBLite consensus disorder prediction 23 44 - -
Trre12g04033 475 MobiDBLite consensus disorder prediction 118 138 - -
Trre12g04033 475 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Trre12g04033 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 326 - -
Trre12g04033 475 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 Pfam AP2 domain 229 279 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 CDD AP2 229 289 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 Gene3D AP2/ERF domain 229 288 IPR036955 GO:0003700|GO:0006355
Trre12g04033 475 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Trre12g04033 475 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 PRINTS Ethylene responsive element binding protein signature 269 289 IPR001471 GO:0003700|GO:0006355
Trre12g04033 475 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04033 Trre-Chr12 55698607 55702395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04033 70 313 AP2-EREBP Transcription Factor Family AT4G36920 66.008 1.88e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre12g04033 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04033 K09284 - gmx:100777102 713.375