Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04026 ATGGAGGAGACACGAGAAGATGCAGGGTCGACAGAGCAAGGGACATCTAATGCTAATGTATCATGGTGGCCTTCAGATTTTGTGGAAAAATTTGGATATGTCGCTTTGGATTCTCAAGATGAGACAGTAAATAATAAAGAATCTCCTAGACATTCTAATGAAAATGTTTTATCACCTTTGAGAGCATCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAGTGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAGGAACTTTTTGATAGTATTCCTACATTGGAGGAGCTTCATGCTTTGGGCGGAGAGGGTTACAGGGCTGATATCATTCTCGTGGATCTAGAGAAAGATAAAAAGCTATCCATGTTGAAGCAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAGTTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGACCCAGTGTGGAAAGTCCTGCAAAAGCCGCGTTTGATGAAAACTCTCACATTTTTGAGAATCGAGGAGTCCAGATGCTAGGGCAAATAAAGCATGGTTCATGTCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGCACACTTATGGTGGGAATGCCAAATGATGGGGCTGTCGAATGTGTAGATTCATACAAGCATATGTCTGTGATAGTTGTATTAAATTCGGTGGAAATGCTGGTTGACCTTATGCGATTTCCGGGTCAATTGTTACCAAAATCAACCAAGGCAGTTTTTATGAGTCATATATCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGACTCTTGTGATTCGCCGTTAGAACCAAACAGTCCTTTATTTGGAGTTTCAGAGAGTGCTGAGAAGGAGGAAAATCTACAATTCCATCGAAGATTTGAAGCGTCTTCAAATGTAACAGGCCTTTCCCTGAGAAATATGATGTTACGATCAAATAGCAGTTCAAGTTTATCTCATAGTGAACCCAATATTACAACCGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGCACGGTCCATGCTTAGTGGTGACAGGACAGAATTTAGAGATTTTGCTGATGACCAGGCTACATCAAGGTCCAGCTATAGATCAGATGGTGCGTCCTCTTCAGAAGCTCGTAGGATACGACGAAGAAGCATCAGCATTACACCAGAGATTGGGGATGATATCGTAAGGGCTGTACGCGCAATGAATGAAACACTAAAGCAAAACCGTCTTATGAGAGAACGCGGGGATGTTAACTCATTCTCCAATTCTCCAAACAATAGAAGTAGTGATGCCGATCTTCAGAAAAATCTGTCAAATTTTCATGTTGATGGTCATGATGAAAGGTCCACCATATATTCTTTTCAGCGTGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCACATGACTATAGAGGTCAAGCTTCTGAGCGAAGTGAACGATCAAGATATGGAGTTAATGATGAACTGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTTCAATAACAAACCTTTATTGCCATATGAAGCATGGAATATTGACTTCTCAGAATTAACTGTTGGAACCCGTGTAGGGATCGGCTTCTTTGGAGAAGTCTTCCGTGGCATATGGAATGGCACGGATGTTGCTATCAAGGTTTTTCTAGAGCAAGATTTAACCGCTGAAAACATGGAAGATTTCTGTAATGAAATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTATCCATGGTTACGGAATATATGGAGATGGGTTCATTGTATTACTTGATACATTTAAGCGGTCAGAAGAAAAAGCTCAGTTTGCGGAGACGACTAAAGATGTTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGTATGAAGATTGTTCACCGTGATTTGAAAAGTGCAAATTGTCTAGTGAACAAACATTGGACCGTGAAAATCTGTGATTTTGGGCTTTCAAGAATAATGTTAGATCCTCCAATCAGAGATTCTTCGTCGGCTGGAACTCCAGAATGGATGGCCCCTGAACTCATCCGAAATGAACCATTCGATGAAAAATGTGATATCTTTAGCTTTGGGGTGATGATGTGGGAGCTGTGGACCTTGAATAGACCATGGGAAGGCGTACCCCCTGAGAGGGTGGTTTATTCTGTTGCTCATGAGGGTTCCAGATTGGAGATTCCCGAAGGCCCGCTAGGCAGTCTGATTTCAGATTGTTGGGCAGAATCCCATGAACGGCCAAGTTGTGATGAGATTCTCTCTCGTTTGGTGGACATGGAATACTCATTGTGTTGA 2442 0.4181 MEETREDAGSTEQGTSNANVSWWPSDFVEKFGYVALDSQDETVNNKESPRHSNENVLSPLRASQILWRTGMLSEPIPSGFYSVIPETRLKELFDSIPTLEELHALGGEGYRADIILVDLEKDKKLSMLKQLIVALVKGLNSNPAAIVKKIAGLVSDFYKRPSVESPAKAAFDENSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESTLMVGMPNDGAVECVDSYKHMSVIVVLNSVEMLVDLMRFPGQLLPKSTKAVFMSHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRRFEASSNVTGLSLRNMMLRSNSSSSLSHSEPNITTAFGRRSRRKVIAEQRTASSSPEHPSFRARARSMLSGDRTEFRDFADDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERGDVNSFSNSPNNRSSDADLQKNLSNFHVDGHDERSTIYSFQRDQVTSQKAMSLPSSPHDYRGQASERSERSRYGVNDELESTWNKVLESQMFNNKPLLPYEAWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGQKKKLSLRRRLKMLRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMLDPPIRDSSSAGTPEWMAPELIRNEPFDEKCDIFSFGVMMWELWTLNRPWEGVPPERVVYSVAHEGSRLEIPEGPLGSLISDCWAESHERPSCDEILSRLVDMEYSLC 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04026 813 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g04026 813 MobiDBLite consensus disorder prediction 493 508 - -
Trre12g04026 813 MobiDBLite consensus disorder prediction 330 345 - -
Trre12g04026 813 SUPERFAMILY Protein kinase-like (PK-like) 532 805 IPR011009 -
Trre12g04026 813 ProSitePatterns Protein kinases ATP-binding region signature. 563 584 IPR017441 GO:0005524
Trre12g04026 813 Gene3D Phosphorylase Kinase; domain 1 550 635 - -
Trre12g04026 813 ProSiteProfiles Protein kinase domain profile. 557 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04026 813 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 334 805 - -
Trre12g04026 813 MobiDBLite consensus disorder prediction 377 393 - -
Trre12g04026 813 MobiDBLite consensus disorder prediction 330 413 - -
Trre12g04026 813 CDD STKc_MAP3K-like 563 805 - -
Trre12g04026 813 MobiDBLite consensus disorder prediction 439 465 - -
Trre12g04026 813 Gene3D Transferase(Phosphotransferase) domain 1 636 811 - -
Trre12g04026 813 Pfam Protein tyrosine and serine/threonine kinase 558 805 IPR001245 GO:0004672|GO:0006468
Trre12g04026 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Trre12g04026 813 MobiDBLite consensus disorder prediction 493 519 - -
Trre12g04026 813 SMART serkin_6 557 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04026 813 MobiDBLite consensus disorder prediction 447 465 - -
Trre12g04026 813 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Trre12g04026 813 FunFam Serine/threonine-protein kinase isoform 1 547 635 - -
Trre12g04026 813 PRINTS Tyrosine kinase catalytic domain signature 717 727 IPR001245 GO:0004672|GO:0006468
Trre12g04026 813 PRINTS Tyrosine kinase catalytic domain signature 631 644 IPR001245 GO:0004672|GO:0006468
Trre12g04026 813 PRINTS Tyrosine kinase catalytic domain signature 736 758 IPR001245 GO:0004672|GO:0006468
Trre12g04026 813 PRINTS Tyrosine kinase catalytic domain signature 670 688 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04026 Trre-Chr12 55601696 55611627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04026 1 813 MAP Kinase Kinase Kinase AT3G58640 70.352 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Trre12g04026 PK_Tyr_Ser-Thr 1.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04026 - - gmx:100803469 1406.35