Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04025 ATGGAGGAGACACGAGAAGATGCAGGGTCGACAGAGCAAGGGACATCTAATGCTAATGTATCATGGTGGCCTTCAGATTTTGTGGAAAAATTTGGATATGTCGCTTTGGATTCTCAAGATGAGACAGTAAATAATAAAGAATCTCCTAGACATTCTAATGAAAATGTTTTATCACCTTTGAGAGCATCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAGTGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAGGAACTTTTTGATAGTATTCCTACATTGGAGGAGCTTCATGCTTTGGGCGGAGAGGGTTACAGGGCTGATATCATTCTCGTGGATCTAGAGAAAGATAAAAAGCTATCCATGTTGAAGCAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAGTTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGACCCAGTGTGGAAAGTCCTGCAAAAGCCGCGTTTGATGAAAACTCTCACATTTTTGAGAATCGAGGAGTCCAGATGCTAGGGCAAATAAAGCATGGTTCATGTCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGCACACTTATGGTGGGAATGCCAAATGATGGGGCTGTCGAATGTGTAGATTCATACAAGCATATGTCTGTGATAGTTGTATTAAATTCGGTGGAAATGCTGGTTGACCTTATGCGATTTCCGGGTCAATTGTTACCAAAATCAACCAAGGCAGTTTTTATGAGTCATATATCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGACTCTTGTGATTCGCCGTTAGAACCAAACAGTCCTTTATTTGGAGTTTCAGAGAGTGCTGAGAAGGAGGAAAATCTACAATTCCATCGAAGATTTGAAGCGTCTTCAAATGTAACAGGCCTTTCCCTGAGAAATATGATGTTACGATCAAATAGCAGTTCAAGTTTATCTCATAGTGAACCCAATATTACAACCGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGCACGGTCCATGCTTAGTGGTGACAGGACAGAATTTAGAGATTTTGCTGATGACCAGGCTACATCAAGGTCCAGCTATAGATCAGATGGTGCGTCCTCTTCAGAAGCTCGTAGGATACGACGAAGAAGCATCAGCATTACACCAGAGATTGGGGATGATATCGTAAGGGCTGTACGCGCAATGAATGAAACACTAAAGCAAAACCGTCTTATGAGAGAACGCGGGGATGTTAACTCATTCTCCAATTCTCCAAACAATAGAAGTAGTGATGCCGATCTTCAGAAAAATCGTGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCACATGACTATAGAGGTCAAGCTTCTGAGCGAAGTGAACGATCAAGATATGGAGTTAATGATGAACTGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTTCAATAACAAACCTTTATTGCCATATGAAGCATGGAATATTGACTTCTCAGAATTAACTGTTGGAACCCGTGTAGGGATCGGCTTCTTTGGAGAAGTCTTCCGTGGCATATGGAATGGCACGGATGTTGCTATCAAGGTTTTTCTAGAGCAAGATTTAACCGCTGAAAACATGGAAGATTTCTGTAATGAAATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTATCCATGGTTACGGAATATATGGAGATGGGTTCATTGTATTACTTGATACATTTAAGCGGTCAGAAGAAAAAGCTCAGTTTGCGGAGACGACTAAAGATGTTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGTATGAAGATTGTTCACCGTGATTTGAAAAGTGCAAATTGTCTAGTGAACAAACATTGGACCGTGAAAATCTGTGATTTTGGGCTTTCAAGAATAATGTTAGATCCTCCAATCAGAGATTCTTCGTCGGCTGGAACTCCAGAATGGATGGCCCCTGAACTCATCCGAAATGAACCATTCGATGAAAAATGTGATATCTTTAGCTTTGGGGTGATGATGTGGGAGCTGTGGACCTTGAATAGACCATGGGAAGGCGTACCCCCTGAGAGGGTGGTTTATTCTGTTGCTCATGAGGGTTCCAGATTGGAGATTCCCGAAGGCCCGCTAGGCAGTCTGATTTCAGATTGTTGGGCAGAATCCCATGAACGGCCAAGTTGTGATGAGATTCTCTCTCGTTTGGTGGACATGGAATACTCATTGTGTTGA 2385 0.4197 MEETREDAGSTEQGTSNANVSWWPSDFVEKFGYVALDSQDETVNNKESPRHSNENVLSPLRASQILWRTGMLSEPIPSGFYSVIPETRLKELFDSIPTLEELHALGGEGYRADIILVDLEKDKKLSMLKQLIVALVKGLNSNPAAIVKKIAGLVSDFYKRPSVESPAKAAFDENSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESTLMVGMPNDGAVECVDSYKHMSVIVVLNSVEMLVDLMRFPGQLLPKSTKAVFMSHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRRFEASSNVTGLSLRNMMLRSNSSSSLSHSEPNITTAFGRRSRRKVIAEQRTASSSPEHPSFRARARSMLSGDRTEFRDFADDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERGDVNSFSNSPNNRSSDADLQKNRDQVTSQKAMSLPSSPHDYRGQASERSERSRYGVNDELESTWNKVLESQMFNNKPLLPYEAWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGQKKKLSLRRRLKMLRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMLDPPIRDSSSAGTPEWMAPELIRNEPFDEKCDIFSFGVMMWELWTLNRPWEGVPPERVVYSVAHEGSRLEIPEGPLGSLISDCWAESHERPSCDEILSRLVDMEYSLC 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04025 794 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g04025 794 MobiDBLite consensus disorder prediction 330 345 - -
Trre12g04025 794 SMART serkin_6 538 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04025 794 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 334 786 - -
Trre12g04025 794 ProSiteProfiles Protein kinase domain profile. 538 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04025 794 Pfam Protein tyrosine and serine/threonine kinase 539 786 IPR001245 GO:0004672|GO:0006468
Trre12g04025 794 FunFam Serine/threonine-protein kinase isoform 1 528 616 - -
Trre12g04025 794 CDD STKc_MAP3K-like 544 786 - -
Trre12g04025 794 MobiDBLite consensus disorder prediction 377 393 - -
Trre12g04025 794 SUPERFAMILY Protein kinase-like (PK-like) 513 786 IPR011009 -
Trre12g04025 794 MobiDBLite consensus disorder prediction 330 413 - -
Trre12g04025 794 ProSitePatterns Protein kinases ATP-binding region signature. 544 565 IPR017441 GO:0005524
Trre12g04025 794 MobiDBLite consensus disorder prediction 447 489 - -
Trre12g04025 794 Gene3D Phosphorylase Kinase; domain 1 531 616 - -
Trre12g04025 794 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672|GO:0006468
Trre12g04025 794 PRINTS Tyrosine kinase catalytic domain signature 651 669 IPR001245 GO:0004672|GO:0006468
Trre12g04025 794 PRINTS Tyrosine kinase catalytic domain signature 612 625 IPR001245 GO:0004672|GO:0006468
Trre12g04025 794 PRINTS Tyrosine kinase catalytic domain signature 698 708 IPR001245 GO:0004672|GO:0006468
Trre12g04025 794 MobiDBLite consensus disorder prediction 440 501 - -
Trre12g04025 794 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Trre12g04025 794 Gene3D Transferase(Phosphotransferase) domain 1 617 792 - -
Trre12g04025 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04025 Trre-Chr12 55601696 55611627 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04025 1 794 MAP Kinase Kinase Kinase AT3G58640 69.623 0.0 1151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Trre12g04025 PK_Tyr_Ser-Thr 1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04025 - - gmx:100803469 1360.13