LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g04021	ATGTCATTACCATCTTCACCACATGACTATAGAGGTCAAGCTTCTAAGCGAAGTGAGCGATCAAGATATGGAGTTAATGATGAACTGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTTCAATAACAAACCTTTATTGCCATATGAAGCATGGAAGAATATTGACTTCTCAGAATTAACTGTTGGAACCCGTGTAGGGATCAGCTTCTTTGGAGAAGTCTTCCGTGGCATATGGAATGGCACAGATGTTGCTATCAAGGTTTTTCTAGAGCAAGATTTAACCGCTGAAAACATGGAAGATTTCTGTAATGAAATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTATCCATGGTTACGGAATATATGGAGATGGGTGCATTGTATTACTTGATACATTTGAGCGGTCAGAAGAAAAAGCTCAGTTTGCGGAGACGACTAAAGATGTTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGTATGAAGATTGTTCACCGTGATTTGAAAAGTGCAAATTGTCTAGTGAACAAACATTGGACCGTGAAAATCTGTGATTTTGGGCTTTCAAGAATAATGTTAGATCCTCCAATCAGAGATTCTTCGTCGGCTGGAACTCCAGAATGGATGGCCCCTGAACGCATCCGAAATGAACCATTCGATGAAAAATGTGATATCTTTAGCTTTGGGGTGATGATGTGGGAACTGTGGACCTTGAACAGACCATGGGAAGGCGTACCCCCTGAGAGGGTAGTTTATTCTGTTGCTCATGAGGGTTCCAGATTGGAGATTCCCCAAGGCCCGCTAGGCAGTCTGATTTCAGGTCCCCGCTACATTTCTTTTATCACATTTTGA	903	0.4208	MSLPSSPHDYRGQASKRSERSRYGVNDELESTWNKVLESQMFNNKPLLPYEAWKNIDFSELTVGTRVGISFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGALYYLIHLSGQKKKLSLRRRLKMLRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMLDPPIRDSSSAGTPEWMAPERIRNEPFDEKCDIFSFGVMMWELWTLNRPWEGVPPERVVYSVAHEGSRLEIPQGPLGSLISGPRYISFITF	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g04021	300	MobiDBLite	consensus disorder prediction	1	21	-	-
	Trre12g04021	300	Pfam	Protein tyrosine and serine/threonine kinase	62	282	IPR001245	GO:0004672\|GO:0006468
	Trre12g04021	300	CDD	STKc_MAP3K-like	67	289	-	-
	Trre12g04021	300	PRINTS	Tyrosine kinase catalytic domain signature	174	192	IPR001245	GO:0004672\|GO:0006468
	Trre12g04021	300	PRINTS	Tyrosine kinase catalytic domain signature	135	148	IPR001245	GO:0004672\|GO:0006468
	Trre12g04021	300	PRINTS	Tyrosine kinase catalytic domain signature	221	231	IPR001245	GO:0004672\|GO:0006468
	Trre12g04021	300	PRINTS	Tyrosine kinase catalytic domain signature	240	262	IPR001245	GO:0004672\|GO:0006468
	Trre12g04021	300	Gene3D	Phosphorylase Kinase; domain 1	54	139	-	-
	Trre12g04021	300	SUPERFAMILY	Protein kinase-like (PK-like)	39	282	IPR011009	-
	Trre12g04021	300	SMART	serkin_6	61	295	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g04021	300	FunFam	Serine/threonine-protein kinase isoform 1	51	139	-	-
	Trre12g04021	300	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	180	192	IPR008271	GO:0004672\|GO:0006468
	Trre12g04021	300	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	46	289	-	-
	Trre12g04021	300	ProSiteProfiles	Protein kinase domain profile.	61	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g04021	300	Gene3D	Transferase(Phosphotransferase) domain 1	141	298	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g04021	Trre-Chr12	55581755	55584202	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g04021	1	290	MAP Kinase Kinase Kinase	AT2G31010	78.966	2.43e-169	487

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Trre12g04021		PK_Tyr_Ser-Thr	2.3e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g04021	-		-	gmx:100810612	541.576