Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04019 ATGAACTCCGTCACCGGAACTCAACCTTCTCCGTCCACCGTACTCGATGACGGCTGGTCCGAAGAAGCTACATTCACACTCATCGACGCTTGGGGAAAACTTTTCCAGAAGGTTAACCGCAACTACTTGCGTCAGTATCACTGGAAAGAAATCGCCAAAGCCGTTAACGACCACCACGGTTACAGTCGAAAATCTCGCCGCACTTACGTTCAATGTAAGAATCGAGTTGAAGCTCTGAAGAAGAAGTATGCAATCGAGAAAGCTAGGGTTTCTGAAAACGGTTTTTACCATAACGATGATGATGATGAATTTCCTTATTTCGATAAACTCGATTCGGTAATTGGTGATACGTTACCGACGAAGAAGGTTTTGCCTCCGTCTGAACCTACTGTGAATGTTCCGGCATGGGCACTTGCACCGGTCGGTCTTCGATCCGGTGCTCAGAGTACTCAGAAGCGACCTGTAATGGCGGAGGAGGGGAGTGTGGAGGAGGAATCACGTTTTCGCCGGAATTTATCTGCATTTGCTGCAGAGGCTGCTGCAGCAGCGGAAGCAGAGATTGATAATTCAGATTCTGATGATTCGTATTTTGATAATTCAGATGGTTCAGAGTTGAACAATGAGAATAGGAAGCGGAAGAGAGGAAGAAAGGATGTGGAATTTGGGTATAGAGAGGTTGCAGGAAGAAGTGATAGAGAATTTGGGAGTAGAGAAGTTGCAAATGTTACCGAGAAGTTTGGCGAGGTACATGAGAGAGTCGAGTCATCGAAACAGCAAAGAAATGCTAAGAAGTTTAGTGAGATACACGAGAGAGTGGAATTGTCGAAGCAGCGAAGAAATGTTGATTTGGAGAAACGGAATATGCAATTTCAAAAGGATTGTCAGAGGCTGCTGCAGTTACAAAAAACCAACCACTCAAGGGAAATGGAAAGAACAACTTCAATGAATGACCGAAATGAACAAATCTCAAACGCGTTTGTTCAGATACGACTGGACCCTTCTTTCCAGGAGATTAGAAAGAGAGCGCAAATGAGTTCGGCTCATAATACAACCCCTCATAGATTGTCTCGTGGGGGATATGAGTTGCTCCAAGAGAAGATGATGAAAGAGAAATTAAAACAAAAGCAAGAATCTTTGGGTGGTTCAGTAGCTGCACCTCCATCTCCACCAGCACGCCATGAGCAATGGAAGAGAGCACGGCAAAAGCCATCAGGAGATTATACATCTGAGGACACACGCATTATTGCCGAGAAAATTGATTCTTTGGTTGAAAAAACATCTCAAGGAACTTTTGTTCCACAAGGACAGAAAGATATTTTGACAGAAGCCATTGGCCGACCTGAGCACTCTGGTCGTGTTCGTGGTGTTGGTCGAGATGCTCAAGTTCCTATTCCCACTGACGAGGTGGAAACGGTTGAGCAGGCCCTCAACCATTTCATTCAATGGCCGAAAAGATTCGTGCAGATTGTTTCTGATAAGGATGTTGATGGATCTGAGAAAGACGATAGAGATATTATGGAGTTGTGTATGGGTAAACAAGAGTTATCCATAACTATTCTACGATTGTGGTTAACGTATTTGAATCGGCTTTCTATTAATGTGGGTAAGAATGACTTGTATGGATTTATCGATCCATGTTTCATTCAAAGTCAACATGATCCAACTAATGCTGAAACCTACATACAAAACAAGTTATCCGATGATAAAAAAGAGTGTTACCTAGCACCTTATCACAACAATCATCATTGGCAATTGCTCATTATTTGTCCTCGGGCGAATAATGTAGTATTCCTATGTTCGTTGGAAAGAAAGCCGGATAAAAATATTATTCACACTGTTGATTCAGCTTTGGATGGATATCATAAGCTGCAAGGTGTTCAAAAGAAGAAGCCAACGTGGATTTACCCTATTTGTCAAAGACAACCCGAGAGTTACGAGTCCGGATACTATATTATGATACATATGCTGAAAATTGTATCCGCTGGTATTATTGATTCATGGATGCAGATATTTGGAAATCCAGAACCATTCGAGGAGGATGAACTTGTAAACGTTCGACAACGATGTCTTTTGAATGGCACTGATCTGGTGATAACTGATAAATGA 2106 0.425 MNSVTGTQPSPSTVLDDGWSEEATFTLIDAWGKLFQKVNRNYLRQYHWKEIAKAVNDHHGYSRKSRRTYVQCKNRVEALKKKYAIEKARVSENGFYHNDDDDEFPYFDKLDSVIGDTLPTKKVLPPSEPTVNVPAWALAPVGLRSGAQSTQKRPVMAEEGSVEEESRFRRNLSAFAAEAAAAAEAEIDNSDSDDSYFDNSDGSELNNENRKRKRGRKDVEFGYREVAGRSDREFGSREVANVTEKFGEVHERVESSKQQRNAKKFSEIHERVELSKQRRNVDLEKRNMQFQKDCQRLLQLQKTNHSREMERTTSMNDRNEQISNAFVQIRLDPSFQEIRKRAQMSSAHNTTPHRLSRGGYELLQEKMMKEKLKQKQESLGGSVAAPPSPPARHEQWKRARQKPSGDYTSEDTRIIAEKIDSLVEKTSQGTFVPQGQKDILTEAIGRPEHSGRVRGVGRDAQVPIPTDEVETVEQALNHFIQWPKRFVQIVSDKDVDGSEKDDRDIMELCMGKQELSITILRLWLTYLNRLSINVGKNDLYGFIDPCFIQSQHDPTNAETYIQNKLSDDKKECYLAPYHNNHHWQLLIICPRANNVVFLCSLERKPDKNIIHTVDSALDGYHKLQGVQKKKPTWIYPICQRQPESYESGYYIMIHMLKIVSAGIIDSWMQIFGNPEPFEEDELVNVRQRCLLNGTDLVITDK 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04019 701 Coils Coil 280 300 - -
Trre12g04019 701 MobiDBLite consensus disorder prediction 144 163 - -
Trre12g04019 701 Gene3D Adenoviral Proteinase; Chain A 470 693 - -
Trre12g04019 701 SUPERFAMILY Cysteine proteinases 493 665 IPR038765 -
Trre12g04019 701 MobiDBLite consensus disorder prediction 393 411 - -
Trre12g04019 701 MobiDBLite consensus disorder prediction 370 411 - -
Trre12g04019 701 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 259 IPR044823 -
Trre12g04019 701 MobiDBLite consensus disorder prediction 185 215 - -
Trre12g04019 701 Gene3D - 19 84 - -
Trre12g04019 701 Pfam Myb/SANT-like DNA-binding domain 17 112 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04019 Trre-Chr12 55563690 55569990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04019 8 149 Trihelix Transcription Factor Family AT3G14180 37.500 1.13e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre12g04019 Myb_DNA-bind_4 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04019 - - tpra:123893969 498.819