Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03981 ATGGCTTCCTCTAAGGATCGCGATAACTTCGTCTACATCGCCAAGCTTGCTGAACAAGCTGAACGGTACGAAGAGATGGTGGATTCGATGAAGAATGTTGCGAATCTTGATGTTGAATTGACTGTTGAAGAAAGGAATTTGCTTTCGGTTGGTTATAAGAATGTGATTGGTGCTCGGAGAGCTTCGTGGAGGATTCTGTCTTCCATAGAGCAAAAGGAAGAGTCGAAGGGAAATGATGTAAATGCGAAACGGATTAAGGAGTATAGGCATAAGGTTGAAACAGAGCTTTCAAACATCTGTAATGATGTTATGAGAGTTATTGATGAACACCTTATACCTTCTGCTACAGCTGGTGAATCAACTGTGTTTTACTATAAGATGAAAGGAGATTACTATCGTTACCTTGCAGAATTTAAGACAGGCAATGAGAAGAAGGAGGCTGGTGATCAGTCAATGAAAGCTTATGAGTCTGCTACCACTGCAGCAGAGGCGGAATTACCCCCCACCCATCCCATTCGATTGGGTCTGGCTTTGAATTTCTCAGTTTTCTATTATGAGATCTTGAACTCACCAGAAAGAGCCTGCCATCTTGCAAAGCAGGCTTTTGATGAAGCGATTTCAGAGCTTGACACCTTGAATGAGGAGTCTTACAAAGACAGTACGTTGATCATGCAACTTCTGAGGGACAATCTGACTCTCTGGACTTCTGACATCCCAGAAGATGGAGAAGAGTCCCAGAAAGCAAACGGCACTGCTAAGCTTGGTGGAGGTGATGATGTAGAGGTGAGTAATTCTTCAAATATGGTAGCTACAATTTATTTTCCTTTGACGACTTCAATTTATTCATTTCATTATTTTTGTTATGGCAGTGACTGTGAGGCCAATGGTTGGTTGGTGAGAACTTCCTTAGGATTTGATGCATGTGTTTGGACATGA 936 0.4209 MASSKDRDNFVYIAKLAEQAERYEEMVDSMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEESKGNDVNAKRIKEYRHKVETELSNICNDVMRVIDEHLIPSATAGESTVFYYKMKGDYYRYLAEFKTGNEKKEAGDQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEESQKANGTAKLGGGDDVEVSNSSNMVATIYFPLTTSIYSFHYFCYGSDCEANGWLVRTSLGFDACVWT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03981 311 Gene3D - 1 249 IPR036815 -
Trre12g03981 311 SMART 1433_4 7 248 IPR023410 -
Trre12g03981 311 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Trre12g03981 311 Coils Coil 13 33 - -
Trre12g03981 311 FunFam 14-3-3 protein epsilon 2 248 - -
Trre12g03981 311 PANTHER 14-3-3 PROTEIN 7 238 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Trre12g03981 311 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Trre12g03981 311 Coils Coil 195 215 - -
Trre12g03981 311 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Trre12g03981 311 Pfam 14-3-3 protein 14 235 IPR023410 -
Trre12g03981 311 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03981 Trre-Chr12 55373542 55376453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03981 1 263 14-3-3 family AT2G42590 82.264 3.98e-161 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03981 K06630 - gmx:547990 484.952