Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03960 ATGGGAATGAAGAGCACAGGTGGAGAAATAGTTCAAGTTCAAGGTGGTCACATTGTTAGAGCAACTGGTAGAAAAGATAGACATAGTAAGGTATATACTGCGAAAGGTCCTCGCGATCGGCGTGTTCGTTTATCAGCACATACTGCTATTCAATTCTACGATGTTCAAGATCGTCTTGGTTATGATAGACCGAGTAAAGCCGTTGATTGGCTTATCAAAAAAGCTAAATCTGCTATTGATAAGCTTGATCAACTTCCTCCATGGAATCCAATTCCTAATGCAACAGAAGTGTTGCAAGAAGAAGGAACCAATAATAATGCAGTTGAAACAAATGAAATGGTTATTGCAGCAGAAAATTCAGAATCTTCTGGTTACAATATGCAGCAGAATAATCATAATCACCATAACCATTCAGCTTTCATTCAATCAAGTATTGATAATGATGCTATAGCATTTTTTCCAACAACTTCTGTTGCTGAAACTATGAATTTTCAAAGCTATTCTTCTGATATAATCTCAAGAACAAACAACTCAACACAGGATCTTGGTCTTTCACTTCATTCATTCCAAGATAATTCAGGTTCAAATGATCAAACACTTTTCTCTGAATCAAACCCTGTTGGATTTGATGCTAATTATCATAGGATTGTGAATTGGAACAATGATCATGGAACAACTGATATGAATAGAACTGGTTTCATGGTTAATTCGCCTTCGTTTTTAGGCCAAGGTTCGGCTTTTTCCGCCCATAGGGGGACCCTTCAGTCCAGTTTTTCGCCATCACTTCGTCCTTGGAATGATATTCCAATGACGGATTCTTCGGTGGATCATCATAATCACAAGTCTCATTCTCATCAACCAATTCATCAAGCTTCTATCTTTGGTAGCAGGTTTTTGTCTGATGCATTGACAGGTTTCTGTATTCCTGCGCGAATTCAAGGCGACGATGAGAGCCATGGAGTCGGTTCCGAAAGACCATCCTCTTCTTCTAATTCTCATCACTAA 1005 0.3861 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEVLQEEGTNNNAVETNEMVIAAENSESSGYNMQQNNHNHHNHSAFIQSSIDNDAIAFFPTTSVAETMNFQSYSSDIISRTNNSTQDLGLSLHSFQDNSGSNDQTLFSESNPVGFDANYHRIVNWNNDHGTTDMNRTGFMVNSPSFLGQGSAFSAHRGTLQSSFSPSLRPWNDIPMTDSSVDHHNHKSHSHQPIHQASIFGSRFLSDALTGFCIPARIQGDDESHGVGSERPSSSSNSHH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03960 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 285 IPR005333 GO:0003700
Trre12g03960 334 Pfam TCP family transcription factor 23 137 IPR017887 -
Trre12g03960 334 MobiDBLite consensus disorder prediction 314 334 - -
Trre12g03960 334 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03960 Trre-Chr12 55175278 55176282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03960 8 331 TCP Transcription Factor Family AT3G15030 40.250 1.87e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre12g03960 TCP 8.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03960 - - gmx:100814907 436.417