Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03959 ATGAGTAATTTCAATGATGATAGAAACCATGATGATGATCATAATTATTTTCCATTTGGAAATTTCTATCGTGGATCAAGTCAAAGCAACTTCAACAAAAAAATCTTGTTAACAGCCATAGTTTCTTTAGTACTTGTATTAATTTTGGTCTTTGCTCTTCACCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGAGCCGCCATTCATCAACTCAGCCTCACCGTTGCTCAAGCTCATACACAATTCACCGAACCGGCTAACACCGGACTCGACCGAGCCCTCATCGCTACTCTTCCAACTTTTCTCTTCAAAGAGGATGAAGAAATGATGAGGTTGCTTCCGAATTGTAACCATAGTTTCCACGTGGGTTGCATCGATAAATGGTTAGCTTCACATTCCACGTGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCTCGAACCAGAGGCACGTGAGGGTCCCACTTTGTTCGAACCACCATTAGAAGGTACATCGGATGGTGATGGTGGTGTTAGTGGGTCCCACAAAAATATTTCACGGTTGAGCTCTTTTCGGAGGATTCTTACTAGAGATAGATCTTCGAGACGAGTCCAACCTTCTAATACTCCATGTGATGATGTTATTATTGATCGTGATTTAGAGAGGCAGTAA 660 0.4288 MSNFNDDRNHDDDHNYFPFGNFYRGSSQSNFNKKILLTAIVSLVLVLILVFALHLYARYVLKRQARRRAAIHQLSLTVAQAHTQFTEPANTGLDRALIATLPTFLFKEDEEMMRLLPNCNHSFHVGCIDKWLASHSTCPICRTKVEPRLEPEAREGPTLFEPPLEGTSDGDGGVSGSHKNISRLSSFRRILTRDRSSRRVQPSNTPCDDVIIDRDLERQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03959 219 ProSiteProfiles Zinc finger RING-type profile. 119 142 IPR001841 -
Trre12g03959 219 Pfam RING-H2 zinc finger domain 103 142 IPR024766 GO:0008270
Trre12g03959 219 SUPERFAMILY RING/U-box 107 148 - -
Trre12g03959 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 152 - -
Trre12g03959 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 149 IPR013083 -
Trre12g03959 219 MobiDBLite consensus disorder prediction 193 219 - -
Trre12g03959 219 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03959 Trre-Chr12 55165467 55166201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03959 2 219 C3H Transcription Factor Family AT2G42360 40.562 9.50e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03959 K19038 - gmx:100796057 186.422