Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03958 ATGGCACAATTACCTCCTAAGATTCCAAATATGTCACCTAGTTGGCCAGATTTTTCCATTCACCAACAAAATATTATGCCAAACATGTCACAACCTAATAACATTGTCACAACCACAAACAATTACCATAATAATCAGAATCCTTCATGGGTGGACGAATTTCTCGACTTCTCGTCCGCAAGGCGAGGCGCTCACCGAAGGTCGGTGAGCGATTCTGTTACGTTTTTAGAGACACCAATGCTCGATGATTGTTCCGGTAAACATAACAACAATGATAACGAGTTTGACAAGTTTGATGATGAACAATTTTTGTCCATGTTCAATGACGAAATAGCCGGTGTTCATAACATGCCGCCAACATTGTCCTCGTCGAATCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGAGAATGAGACTAATAAACAAGTGAAGAAGGAGATGAAGAAAGAGGAAGGTTATGATAACCAATTGAAAAATGAACCTGATGAGGTTGAAAGCCAATGCAATCAAGAAAATTCACAGCCTCAAAATAACAACAATGCTACTTCTTCTAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGAGAAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTTCTTTCTCCAAGAGTTGCATTTTTGGATCATCAACGCTTGCTTCTTAATGTTGACAATAGTGCTCTCAAGCAAAGAATTGCAGCTCTTGCTCAAGACAAAATTTTCAAAGATGCTCATCAAGAGGCATTGAAGAGGGAAATAGAGAGATTAAGACAAGTATATCACAATCAGAATCTCAAGAAGATTGAAAATGTTAATGGATCACCCTTACCATCTCCATCACAAAAGCCAATGTGTGATCCTCAAACAGAAAATGAACAACTTCTCAATGTATGA 975 0.3856 MAQLPPKIPNMSPSWPDFSIHQQNIMPNMSQPNNIVTTTNNYHNNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCSGKHNNNDNEFDKFDDEQFLSMFNDEIAGVHNMPPTLSSSNPSSPSDQNFVNDENETNKQVKKEMKKEEGYDNQLKNEPDEVESQCNQENSQPQNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHNQNLKKIENVNGSPLPSPSQKPMCDPQTENEQLLNV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03958 324 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Trre12g03958 324 CDD bZIP_plant_RF2 195 245 IPR044759 GO:0003700|GO:0006355
Trre12g03958 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 244 IPR004827 GO:0003700|GO:0006355
Trre12g03958 324 MobiDBLite consensus disorder prediction 114 194 - -
Trre12g03958 324 PANTHER BASIC LEUCINE ZIPPER 34 1 313 - -
Trre12g03958 324 MobiDBLite consensus disorder prediction 296 324 - -
Trre12g03958 324 Gene3D - 193 296 - -
Trre12g03958 324 Pfam bZIP transcription factor 194 238 IPR004827 GO:0003700|GO:0006355
Trre12g03958 324 MobiDBLite consensus disorder prediction 117 139 - -
Trre12g03958 324 FunFam Basic leucine zipper 61 193 266 - -
Trre12g03958 324 MobiDBLite consensus disorder prediction 168 189 - -
Trre12g03958 324 SUPERFAMILY Leucine zipper domain 194 248 IPR046347 GO:0003700|GO:0006355
Trre12g03958 324 Coils Coil 273 293 - -
Trre12g03958 324 MobiDBLite consensus disorder prediction 140 167 - -
Trre12g03958 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03958 Trre-Chr12 55157753 55160826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03958 1 271 bZIP Transcription Factor Family AT3G58120 56.314 1.33e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03958 bZIP_2 3.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03958 - - gmx:100101874 424.476