Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03957 ATGGCACAATTACCTCCTAAGATTCCAAATATGTCACCTAGTTGGCCAGATTTTTCCATTCACCAACAAAATATTATGCCAAACATGTCACAACCTAATAACATTGTCACAACCACAAACAATTACCATAATAATCAGAATCCTTCATGGGTGGACGAATTTCTCGACTTCTCGTCCGCAAGGCGAGGCGCTCACCGAAGGTCGGTGAGCGATTCTGTTACGTTTTTAGAGACACCAATGCTCGATGATTGTTCCGGTAAACATAACAACAATGATAACGAGTTTGACAAGTTTGATGATGAACAATTTTTGTCCATGTTCAATGACGAAATAGCCGGTGTTCATAACATGCCGCCAACATTGTCCTCGTCGAATCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGAGAATGAGACTAATAAACAAGTGAAGAAGGAGATGAAGAAAGAGGAAGGTTATGATAACCAATTGAAAAATGAACCTGATGAGGTTGAAAGCCAATGCAATCAAGAAAATTCACAGCCTCAAAATAACAACAATGCTACTTCTTCTAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGAGAAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTTCTTTCTCCAAGAGTTGCATTTTTGGATCATCAACGCTTGCTTCTTAATGTTGACAATAGTGCTCTCAAGCAAAGAATTGCAGCTCTTGCTCAAGACAAAATTTTCAAAGATGCTCATCAAGAGGCATTGAAGAGGGAAATAGAGAGATTAAGACAAGTATATCACAATCAGAATCTCAAGAAGATTGAAAATGTTAATGGATCACCCTTACCATCTCCATCACAAAAGCCAATGTGTGATCCTCAAACAGAAAATGAACAACTTCTCAATGGAAATACATGTGCTGCAGTGGCATCAAAAGAGAGGGTGGAAGAAACAGTTGCGTCTGCTTTAATTTGA 1038 0.3892 MAQLPPKIPNMSPSWPDFSIHQQNIMPNMSQPNNIVTTTNNYHNNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCSGKHNNNDNEFDKFDDEQFLSMFNDEIAGVHNMPPTLSSSNPSSPSDQNFVNDENETNKQVKKEMKKEEGYDNQLKNEPDEVESQCNQENSQPQNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHNQNLKKIENVNGSPLPSPSQKPMCDPQTENEQLLNGNTCAAVASKERVEETVASALI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03957 345 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Trre12g03957 345 CDD bZIP_plant_RF2 195 245 IPR044759 GO:0003700|GO:0006355
Trre12g03957 345 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 244 IPR004827 GO:0003700|GO:0006355
Trre12g03957 345 MobiDBLite consensus disorder prediction 114 194 - -
Trre12g03957 345 Gene3D - 193 296 - -
Trre12g03957 345 PANTHER BASIC LEUCINE ZIPPER 34 1 316 - -
Trre12g03957 345 MobiDBLite consensus disorder prediction 297 316 - -
Trre12g03957 345 FunFam Basic leucine zipper 61 193 266 - -
Trre12g03957 345 MobiDBLite consensus disorder prediction 117 139 - -
Trre12g03957 345 SUPERFAMILY Leucine zipper domain 194 248 IPR046347 GO:0003700|GO:0006355
Trre12g03957 345 MobiDBLite consensus disorder prediction 168 189 - -
Trre12g03957 345 Pfam bZIP transcription factor 194 238 IPR004827 GO:0003700|GO:0006355
Trre12g03957 345 Coils Coil 273 293 - -
Trre12g03957 345 MobiDBLite consensus disorder prediction 140 167 - -
Trre12g03957 345 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03957 Trre-Chr12 55157753 55161401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03957 1 271 bZIP Transcription Factor Family AT3G58120 56.314 1.06e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03957 bZIP_1 3.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03957 - - gmx:100101874 424.476