Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03944 ATGGACAATAGAGATATTTCAAATGGTTTCCTTCATGCAAACACAACAAGTTCATCAAATGAAAATCCTACTATTTTAAAGAGAAAAAGAAACCTCCCTGGAAATCCAGATCCTGAAGCAGAAGTGATATCATTATCACCAAAAACATTGATGGCAACAAACAGATTTGTGTGTGAAATTTGTCTAAAAGGTTTTCAAAGGGATCAAAATCTTCAACTCCATCGACGCGGACATAACCTTCCTTGGAAGCTCAAACAAAGAACAAGCAAAGAAATAAGGAAGAGAGTGTATGTTTGTCCAGAAAAGACTTGTGTTCACAATCATCCTTCAAGGGCTTTAGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAGTGCTCAAAGTTTTATGCTGTTCAATCAGATATGAAAGCACATTCAAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGCACTATATTTTCAAGGAGGGATAGCTTTGTGACTCATAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAATGGATCAACCAACTCATTATTAGGAATGGGAGGTAATAACATTGGTAATTACAATATCATGCAAAATTCTCTTATCCCAAACATAGGAGAAACTCATTTTTCTTCAATTTTCAAGCCAAATTCATGCACAAATCAAGAAACAACAAATCAAACATCAAGATCAGGTTTATCCCTTTGGATGTCTCAAACATCTCATGACACGATATTGACTAATAATAGCTATATTGGAAACACACCACACTCTAATTATCATCAAAATTGGGTGTTTGGAAATAAATTCTCTTCTAATAATGAATCTCAAGAGTTAACTAGTTCTGTTTCACTTCCACTTGTCAATAACAACAACATTGATAAGGATAGTGCAAATGCAAATGCAAATTCAAACAACCTTGTTAGTGTTCCTTCTTTGTATAGCTCACAACATCAATCTCAATCTAATCATCAAATTACAACCTCAGCAAACATGTCAGCAACTGCTTTGTTACAAAAAGCTGCTCAAATTGGAACAACTTCAAGTGATTCATTATTCCTTGGAAGTTTAGGATTGAGATGTAATAGTCCAAGTCAAGATCATGGTAACAAATTTTGTGGGGTGTTTACTACTAGTGATCATGGGACAGCAGAGTACTATTCAAGTGAATTGTCACAAATACCCCCCACAAAACGACGATGTGTGCAGAATGAAGAGAATGTTTGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCTAACCATTTGCATCCCTTCATCCATCAGCGGATGGATTTGATTTGA 1350 0.3615 MDNRDISNGFLHANTTSSSNENPTILKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDMKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSTNSLLGMGGNNIGNYNIMQNSLIPNIGETHFSSIFKPNSCTNQETTNQTSRSGLSLWMSQTSHDTILTNNSYIGNTPHSNYHQNWVFGNKFSSNNESQELTSSVSLPLVNNNNIDKDSANANANSNNLVSVPSLYSSQHQSQSNHQITTSANMSATALLQKAAQIGTTSSDSLFLGSLGLRCNSPSQDHGNKFCGVFTTSDHGTAEYYSSELSQIPPTKRRCVQNEENVWGQTRDFLGVGGANHLHPFIHQRMDLI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03944 449 MobiDBLite consensus disorder prediction 1 37 - -
Trre12g03944 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Trre12g03944 449 Gene3D Classic Zinc Finger 89 180 - -
Trre12g03944 449 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Trre12g03944 449 SMART c2h2final6 132 152 IPR013087 -
Trre12g03944 449 SMART c2h2final6 97 127 IPR013087 -
Trre12g03944 449 SMART c2h2final6 56 78 IPR013087 -
Trre12g03944 449 MobiDBLite consensus disorder prediction 8 26 - -
Trre12g03944 449 FunFam protein indeterminate-domain 12-like 35 103 - -
Trre12g03944 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 435 IPR031140 -
Trre12g03944 449 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Trre12g03944 449 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03944 Trre-Chr12 55056937 55060006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03944 22 433 IDZ Gene Family AT1G03840 51.724 4.50e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g03944 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03944 K25870 - gmx:100778666 589.726