Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03941 ATGACTCAGTGTAGTTACCTTGAAAATAATCATCATAGTGTTCTTATGGAGAGGCGCAAAGATAGCTTAATAAGAACTTGTCCTACTTGTGGTCATCATATCAAATGCCAAGATCAGGGTGCTGGAATTCATGAGTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGAGGTCTGATATTCAAATGCTTCATCCTTTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACTCATCCAGAGAAGTTACCAGGCGTTGGCAAAGACGGACTGATCCGACATTTCTTTCATAGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGGAGAAAAGTGCACACAGATGAAGATGGAAGTGAAACAAGATGGCACAAAACAGGTAAAACAAGACCAGTTTATATAAATGGCAAATTAAAAGGTTACAAAAAAATCCTTGTGCTTTACACTAACTACAGAAAGCAGAGAAAGCCAGAGAAAACAAATTGGGTTATGCATCAATATCATCTTGGAAACAATGAAGAAGAAAAAGAAGGAGAATTAGTAGTTTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTTCATTGATGAAAGAATCATCATCATTTTCTGATCAAAAACTAATCAATGATAATCAAGGTGTGCATGAAGTGATTAATCATAAAAACAGTGGATTTGTTGAATATTATAATACTTCTTTTATATCTTTTGATCAAGGGGAACAACATAGATCAAACAATGCTCAAGTGGTTACTCATTTTCCTGTTCATGATGGTAATTCTTTCATTCCTTGA 858 0.3566 MTQCSYLENNHHSVLMERRKDSLIRTCPTCGHHIKCQDQGAGIHELPGLPAGVKFDPTDQEILEHLEAKVRSDIQMLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVYINGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKESSSFSDQKLINDNQGVHEVINHKNSGFVEYYNTSFISFDQGEQHRSNNAQVVTHFPVHDGNSFIP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03941 285 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Trre12g03941 285 FunFam NAC domain-containing protein 73 58 212 - -
Trre12g03941 285 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Trre12g03941 285 MobiDBLite consensus disorder prediction 128 143 - -
Trre12g03941 285 MobiDBLite consensus disorder prediction 122 143 - -
Trre12g03941 285 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Trre12g03941 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Trre12g03941 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 20 243 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03941 Trre-Chr12 55047106 55048763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03941 25 227 NAC Transcription Factor Family AT4G28500 77.451 1.73e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03941 NAM 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03941 - - gmx:100791648 506.523