Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03940 ATGTTTTCTCTTGAGAGTTGGAGTGATAAACTAAGTGTGCATTCATTTAGGGTGAATGAAAAGAGTGACATTTATAGCTTTGGTGTAGTGATTTTGGAATTGGTAACCGGAAAACATCCTATTGATCAAGAATATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGGAAGGACATGATCAAGTGATTGATCCAACTCTTGATTCTAAGTATAAGGAAGAAATAAGCAAAGTACTCAGCTTGGGGATTCTTTGCACAAGCTCACTTCCTATAAACCGTCTTTCAATGAGAAGTGTAGTGAAAATGCTGGAAGAAGTAACAGCAGTTGCTAAATCTAGAAGTGGAAAATTCTCTCCTTATTACAAGAAGTAG 384 0.3568 MFSLESWSDKLSVHSFRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEEGHDQVIDPTLDSKYKEEISKVLSLGILCTSSLPINRLSMRSVVKMLEEVTAVAKSRSGKFSPYYKK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03940 127 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 110 - -
Trre12g03940 127 SUPERFAMILY Protein kinase-like (PK-like) 6 108 IPR011009 -
Trre12g03940 127 Pfam Protein tyrosine and serine/threonine kinase 12 57 IPR001245 GO:0004672|GO:0006468
Trre12g03940 127 Gene3D Transferase(Phosphotransferase) domain 1 5 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03940 Trre-Chr12 55042576 55042959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03940 13 127 Receptor kinase-like Gene Family AT1G28440 59.350 7.05e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g03940 PK_Tyr_Ser-Thr 1.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03940 - - gmx:100778128 162.54