Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03939 ATGAACTATACCAAAATGGTTGAACTATTATTACTCTTTCTCTCAATAATCTCTCCCACTCTCTCTCTCAACCAAGAAGGTCTCTTTCTTCTCCAAGCCAAACTCCATCTCTCTGACCCTTCTAACTCTCTCTCCAACTGGTCTCCCCATGACTCCACTCCATGCAACTGGACAGGCATCCTCTGCAACAATCTCACAAACTCTGTCACTTCCATAAACCTCCCTAACTCCAATCTCTCCGGTCCATTCCCGACTTCCCTCTGCCGTCTCCCTTCTCTCTCCCATCTCTCTCTCCCTAACAACAGCCTCAACTCCACTCTCCCCACCACCATCTCCACTTGCACCACTCTCCACCATCTCAACCTCTCCTTAAACCTCTTCTCCGGCGAACTTCCAACCACTCTCTCCAATCTCCCTAACCTTAAACAACTCGACCTCTCCTTTAACAACTTCTCCGGTAAAATCCCGCCAACTTTCGCCTTTTTCCGACAACTTCAATCTCTCTCCCTTGTTAACAATCTTCTCACCGGAAACATACCTTCTTCTCTAAGCAACGTTTCATCTCTCAAACAACTTCACCTTGCTTACAACAATTTCTTCTCAGAAATTCCAAAAGAATTTGGAAACCTCACCAACCTTGAAACTCTATGGCTTTCCGGTTGCAACCTTGTGGGTCAAATTCCGGTTTCTTTTCGGAAACTCGTTCATCTTCAAAACCTCGATTTATCACAGAACATGCTGAACGGAACCATACCGGAACTTATGATCTCTGGTTTAACCAGCATTGTACAAATCGAACTTTACCAAAACTCATTCTCCGGCGAGTTACCACGTGCCGGTGTATCGAATTTGTCTCGTTTAGAACGATTCGATGCTTCTGATAATGAGTTAACAGGAACGATTCCCGACGAGTTGTGTCGATTGAAGAAATTGGGGTCTTTGAATTTGTACTATAACAAACTCAACGGTTCTCTGCCGGAGAGTTTATCTTCGTCGGAGAATCTATACGAGCTTCTTCTATTCAACAACACACTCTCCGGAAAGTTACCGAGTGGTTTGGGAAACAATTCACACCTTCAGTTACTTGATGTTTCGTTTAATCAATTTTCCGGCGAGATTCCGGCGAGTTTATGTCGTCAGGGAAGTTTACAGGAGCTCTTAATAATTCACAATTCATTTTCCGGTGAAATTCCGGCGAGTCTCGGAAACTGTTTGAGTTTAATGAGAGTTAGGTTTGGGAATAATAATCTCTCTGGTGTTGTTCCTTATGGACTTTGGGGTCTACCCCATATGTATCTACTTGAGCTTGTTGAAAATTCTCTTTCTGGGTCAATTTCTAATGCAATTTCACATGCAAATAATCTTTCAATTTTGTTAATTTCAGGGAATAGGTTTAATGGGTCGATTCCTGATTCGATCGGGTTGTTGGATAATCTCGGAGAGTTTGTTGCTAGTAGGAATAGTTTTACCGGTCAAATTTCGATCGGTATGGTTAAGTTAAGTCAATTGGGTAGGCTTGTTCTTAGAGATAATCAATTTTCTGGTGAGATTCCTAATTGGGTTGGTGATTGGAAAAAGCTTAATGAACTTGATTTGGCTAATAATAGGTTTAATGGTAATATTCCAAGTGAATTAGGAACTTTGCCAGGGCTTAATTATCTTGATCTTTCTGGTAATTTACTTTCTGGTGAAATTCCAATGGATCTGCAATATTTGAAGCTTGATTTTTTTAATCTGTCAAATAATAAGCTTTCTGGCGAAATTCCGCCTCTTTACGATAATCAGAATTATAGGGAAAGTTTTGTAGGAAATACCGGTTTATGTGGCGATCTTTCGGGATTGTGTCCGAATTTAGGTGAGAAGAGTAAGAATAGGAACTTTGTGTGGGTTTTTAGATTCATATTTGTACTTGCTGGTGTTGTTTTAATTGTCGGGGTGGCATGGTTTTACTTCAAATTCCGAAATTTCAAGAAGTTGAAGAAAGGTTTTCGTGTATCGAAGTGGAGATCGTTTCATAAACTAGGGTTTAGCGAGTTCGAGATTGTTAAATTGATGAGTGAAGATAATGTGATAGGAAGTGGATCTTCTGGGAAAGTTTACAAAGTTGTGTTGAGTAATGGAGAGGTAGTAGCAGTGAAGAAATTATGGAGAACAACTAAGATAGAAAGTGGAAATGTTGATGATCAAGAAAAAGATGAATTTGAAGTTGAAGTTGAAACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGTTATGGTGTTGTTATAATAGTGGAGATAATAAACTCTTAGTTTATGAGTATATGCCTAATGGAAGTTTAGATGATTTGTTGCATAATGGTAAGAAAAAATTGTTGGATTGGCCCACAAGACTTAAAATTGCTATTGATGCTGCTGAGGGACTTTCATATTTGCATCATGATTGTGTTGTTCCTATTGTTCATAGAGATGTAAAATCTAGCAATATTTTGATAGATGGAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTTGCTAAATTTGTTAGAGGTGTTAGCAATGGGACAGAAGAACCTATGTCTATGATTGCTGGATCTTGTGGTTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGATATTTATAGCTTTGGTGTAGTGATTTTGGAATTGGTAACTGGAAAACATCCTATTGATCAAGAATATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGGAAGGACATGATCAAGTGATTGATCCAACTCTTGATTCTAAGTATAAGGAAGAAATAAGCAAAGTACTCAACTTGGGGATTCTTTGCACAAGCTCTCTTCCTATAAACCGTCCTTCAATGAGAAGTGTAGTGAAAATGTTGCAGGAAGTAACATCAGTTGCTAAGTCTAGAAGTGGAAAATTCTCTCCTTATTATCAAGAAGTAGTCTCAGACAATGACCATTAG 2970 0.3889 MNYTKMVELLLLFLSIISPTLSLNQEGLFLLQAKLHLSDPSNSLSNWSPHDSTPCNWTGILCNNLTNSVTSINLPNSNLSGPFPTSLCRLPSLSHLSLPNNSLNSTLPTTISTCTTLHHLNLSLNLFSGELPTTLSNLPNLKQLDLSFNNFSGKIPPTFAFFRQLQSLSLVNNLLTGNIPSSLSNVSSLKQLHLAYNNFFSEIPKEFGNLTNLETLWLSGCNLVGQIPVSFRKLVHLQNLDLSQNMLNGTIPELMISGLTSIVQIELYQNSFSGELPRAGVSNLSRLERFDASDNELTGTIPDELCRLKKLGSLNLYYNKLNGSLPESLSSSENLYELLLFNNTLSGKLPSGLGNNSHLQLLDVSFNQFSGEIPASLCRQGSLQELLIIHNSFSGEIPASLGNCLSLMRVRFGNNNLSGVVPYGLWGLPHMYLLELVENSLSGSISNAISHANNLSILLISGNRFNGSIPDSIGLLDNLGEFVASRNSFTGQISIGMVKLSQLGRLVLRDNQFSGEIPNWVGDWKKLNELDLANNRFNGNIPSELGTLPGLNYLDLSGNLLSGEIPMDLQYLKLDFFNLSNNKLSGEIPPLYDNQNYRESFVGNTGLCGDLSGLCPNLGEKSKNRNFVWVFRFIFVLAGVVLIVGVAWFYFKFRNFKKLKKGFRVSKWRSFHKLGFSEFEIVKLMSEDNVIGSGSSGKVYKVVLSNGEVVAVKKLWRTTKIESGNVDDQEKDEFEVEVETLGKIRHKNIVRLWCCYNSGDNKLLVYEYMPNGSLDDLLHNGKKKLLDWPTRLKIAIDAAEGLSYLHHDCVVPIVHRDVKSSNILIDGEFGAKIADFGVAKFVRGVSNGTEEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEEGHDQVIDPTLDSKYKEEISKVLNLGILCTSSLPINRPSMRSVVKMLQEVTSVAKSRSGKFSPYYQEVVSDNDH 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03939 989 FunFam Receptor-like protein kinase HSL1 310 617 - -
Trre12g03939 989 Pfam Protein kinase domain 687 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03939 989 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Trre12g03939 989 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Trre12g03939 989 ProSiteProfiles Protein kinase domain profile. 685 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03939 989 SUPERFAMILY L domain-like 38 373 - -
Trre12g03939 989 SUPERFAMILY RNI-like 281 590 - -
Trre12g03939 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 276 - -
Trre12g03939 989 Gene3D Ribonuclease Inhibitor 258 617 IPR032675 -
Trre12g03939 989 SUPERFAMILY Protein kinase-like (PK-like) 685 962 IPR011009 -
Trre12g03939 989 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Trre12g03939 989 SMART serkin_6 685 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03939 989 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Trre12g03939 989 Pfam Leucine rich repeat 163 223 IPR001611 GO:0005515
Trre12g03939 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Trre12g03939 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 232 964 - -
Trre12g03939 989 Gene3D Ribonuclease Inhibitor 184 257 IPR032675 -
Trre12g03939 989 FunFam Receptor-like protein kinase HSL1 669 768 - -
Trre12g03939 989 Gene3D Transferase(Phosphotransferase) domain 1 769 981 - -
Trre12g03939 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 977 - -
Trre12g03939 989 Gene3D Phosphorylase Kinase; domain 1 668 768 - -
Trre12g03939 989 SMART LRR_typ_2 500 524 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 308 332 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 210 233 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 186 209 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 138 161 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 90 114 IPR003591 -
Trre12g03939 989 SMART LRR_typ_2 234 258 IPR003591 -
Trre12g03939 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03939 Trre-Chr12 55035507 55038810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03939 19 986 Receptor kinase-like Gene Family AT1G28440 59.372 0.0 1126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g03939 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03939 - - gmx:100778128 1258.82