Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03939 | ATGAACTATACCAAAATGGTTGAACTATTATTACTCTTTCTCTCAATAATCTCTCCCACTCTCTCTCTCAACCAAGAAGGTCTCTTTCTTCTCCAAGCCAAACTCCATCTCTCTGACCCTTCTAACTCTCTCTCCAACTGGTCTCCCCATGACTCCACTCCATGCAACTGGACAGGCATCCTCTGCAACAATCTCACAAACTCTGTCACTTCCATAAACCTCCCTAACTCCAATCTCTCCGGTCCATTCCCGACTTCCCTCTGCCGTCTCCCTTCTCTCTCCCATCTCTCTCTCCCTAACAACAGCCTCAACTCCACTCTCCCCACCACCATCTCCACTTGCACCACTCTCCACCATCTCAACCTCTCCTTAAACCTCTTCTCCGGCGAACTTCCAACCACTCTCTCCAATCTCCCTAACCTTAAACAACTCGACCTCTCCTTTAACAACTTCTCCGGTAAAATCCCGCCAACTTTCGCCTTTTTCCGACAACTTCAATCTCTCTCCCTTGTTAACAATCTTCTCACCGGAAACATACCTTCTTCTCTAAGCAACGTTTCATCTCTCAAACAACTTCACCTTGCTTACAACAATTTCTTCTCAGAAATTCCAAAAGAATTTGGAAACCTCACCAACCTTGAAACTCTATGGCTTTCCGGTTGCAACCTTGTGGGTCAAATTCCGGTTTCTTTTCGGAAACTCGTTCATCTTCAAAACCTCGATTTATCACAGAACATGCTGAACGGAACCATACCGGAACTTATGATCTCTGGTTTAACCAGCATTGTACAAATCGAACTTTACCAAAACTCATTCTCCGGCGAGTTACCACGTGCCGGTGTATCGAATTTGTCTCGTTTAGAACGATTCGATGCTTCTGATAATGAGTTAACAGGAACGATTCCCGACGAGTTGTGTCGATTGAAGAAATTGGGGTCTTTGAATTTGTACTATAACAAACTCAACGGTTCTCTGCCGGAGAGTTTATCTTCGTCGGAGAATCTATACGAGCTTCTTCTATTCAACAACACACTCTCCGGAAAGTTACCGAGTGGTTTGGGAAACAATTCACACCTTCAGTTACTTGATGTTTCGTTTAATCAATTTTCCGGCGAGATTCCGGCGAGTTTATGTCGTCAGGGAAGTTTACAGGAGCTCTTAATAATTCACAATTCATTTTCCGGTGAAATTCCGGCGAGTCTCGGAAACTGTTTGAGTTTAATGAGAGTTAGGTTTGGGAATAATAATCTCTCTGGTGTTGTTCCTTATGGACTTTGGGGTCTACCCCATATGTATCTACTTGAGCTTGTTGAAAATTCTCTTTCTGGGTCAATTTCTAATGCAATTTCACATGCAAATAATCTTTCAATTTTGTTAATTTCAGGGAATAGGTTTAATGGGTCGATTCCTGATTCGATCGGGTTGTTGGATAATCTCGGAGAGTTTGTTGCTAGTAGGAATAGTTTTACCGGTCAAATTTCGATCGGTATGGTTAAGTTAAGTCAATTGGGTAGGCTTGTTCTTAGAGATAATCAATTTTCTGGTGAGATTCCTAATTGGGTTGGTGATTGGAAAAAGCTTAATGAACTTGATTTGGCTAATAATAGGTTTAATGGTAATATTCCAAGTGAATTAGGAACTTTGCCAGGGCTTAATTATCTTGATCTTTCTGGTAATTTACTTTCTGGTGAAATTCCAATGGATCTGCAATATTTGAAGCTTGATTTTTTTAATCTGTCAAATAATAAGCTTTCTGGCGAAATTCCGCCTCTTTACGATAATCAGAATTATAGGGAAAGTTTTGTAGGAAATACCGGTTTATGTGGCGATCTTTCGGGATTGTGTCCGAATTTAGGTGAGAAGAGTAAGAATAGGAACTTTGTGTGGGTTTTTAGATTCATATTTGTACTTGCTGGTGTTGTTTTAATTGTCGGGGTGGCATGGTTTTACTTCAAATTCCGAAATTTCAAGAAGTTGAAGAAAGGTTTTCGTGTATCGAAGTGGAGATCGTTTCATAAACTAGGGTTTAGCGAGTTCGAGATTGTTAAATTGATGAGTGAAGATAATGTGATAGGAAGTGGATCTTCTGGGAAAGTTTACAAAGTTGTGTTGAGTAATGGAGAGGTAGTAGCAGTGAAGAAATTATGGAGAACAACTAAGATAGAAAGTGGAAATGTTGATGATCAAGAAAAAGATGAATTTGAAGTTGAAGTTGAAACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGTTATGGTGTTGTTATAATAGTGGAGATAATAAACTCTTAGTTTATGAGTATATGCCTAATGGAAGTTTAGATGATTTGTTGCATAATGGTAAGAAAAAATTGTTGGATTGGCCCACAAGACTTAAAATTGCTATTGATGCTGCTGAGGGACTTTCATATTTGCATCATGATTGTGTTGTTCCTATTGTTCATAGAGATGTAAAATCTAGCAATATTTTGATAGATGGAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTTGCTAAATTTGTTAGAGGTGTTAGCAATGGGACAGAAGAACCTATGTCTATGATTGCTGGATCTTGTGGTTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGATATTTATAGCTTTGGTGTAGTGATTTTGGAATTGGTAACTGGAAAACATCCTATTGATCAAGAATATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGGAAGGACATGATCAAGTGATTGATCCAACTCTTGATTCTAAGTATAAGGAAGAAATAAGCAAAGTACTCAACTTGGGGATTCTTTGCACAAGCTCTCTTCCTATAAACCGTCCTTCAATGAGAAGTGTAGTGAAAATGTTGCAGGAAGTAACATCAGTTGCTAAGTCTAGAAGTGGAAAATTCTCTCCTTATTATCAAGAAGTAGTCTCAGACAATGACCATTAG | 2970 | 0.3889 | MNYTKMVELLLLFLSIISPTLSLNQEGLFLLQAKLHLSDPSNSLSNWSPHDSTPCNWTGILCNNLTNSVTSINLPNSNLSGPFPTSLCRLPSLSHLSLPNNSLNSTLPTTISTCTTLHHLNLSLNLFSGELPTTLSNLPNLKQLDLSFNNFSGKIPPTFAFFRQLQSLSLVNNLLTGNIPSSLSNVSSLKQLHLAYNNFFSEIPKEFGNLTNLETLWLSGCNLVGQIPVSFRKLVHLQNLDLSQNMLNGTIPELMISGLTSIVQIELYQNSFSGELPRAGVSNLSRLERFDASDNELTGTIPDELCRLKKLGSLNLYYNKLNGSLPESLSSSENLYELLLFNNTLSGKLPSGLGNNSHLQLLDVSFNQFSGEIPASLCRQGSLQELLIIHNSFSGEIPASLGNCLSLMRVRFGNNNLSGVVPYGLWGLPHMYLLELVENSLSGSISNAISHANNLSILLISGNRFNGSIPDSIGLLDNLGEFVASRNSFTGQISIGMVKLSQLGRLVLRDNQFSGEIPNWVGDWKKLNELDLANNRFNGNIPSELGTLPGLNYLDLSGNLLSGEIPMDLQYLKLDFFNLSNNKLSGEIPPLYDNQNYRESFVGNTGLCGDLSGLCPNLGEKSKNRNFVWVFRFIFVLAGVVLIVGVAWFYFKFRNFKKLKKGFRVSKWRSFHKLGFSEFEIVKLMSEDNVIGSGSSGKVYKVVLSNGEVVAVKKLWRTTKIESGNVDDQEKDEFEVEVETLGKIRHKNIVRLWCCYNSGDNKLLVYEYMPNGSLDDLLHNGKKKLLDWPTRLKIAIDAAEGLSYLHHDCVVPIVHRDVKSSNILIDGEFGAKIADFGVAKFVRGVSNGTEEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEEGHDQVIDPTLDSKYKEEISKVLNLGILCTSSLPINRPSMRSVVKMLQEVTSVAKSRSGKFSPYYQEVVSDNDH | 989 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03939 | 989 | FunFam | Receptor-like protein kinase HSL1 | 310 | 617 | - | - | |
Trre12g03939 | 989 | Pfam | Protein kinase domain | 687 | 959 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre12g03939 | 989 | ProSitePatterns | Protein kinases ATP-binding region signature. | 691 | 714 | IPR017441 | GO:0005524 | |
Trre12g03939 | 989 | Gene3D | Ribonuclease Inhibitor | 23 | 182 | IPR032675 | - | |
Trre12g03939 | 989 | ProSiteProfiles | Protein kinase domain profile. | 685 | 966 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre12g03939 | 989 | SUPERFAMILY | L domain-like | 38 | 373 | - | - | |
Trre12g03939 | 989 | SUPERFAMILY | RNI-like | 281 | 590 | - | - | |
Trre12g03939 | 989 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 184 | 276 | - | - | |
Trre12g03939 | 989 | Gene3D | Ribonuclease Inhibitor | 258 | 617 | IPR032675 | - | |
Trre12g03939 | 989 | SUPERFAMILY | Protein kinase-like (PK-like) | 685 | 962 | IPR011009 | - | |
Trre12g03939 | 989 | Pfam | Leucine rich repeat N-terminal domain | 24 | 63 | IPR013210 | - | |
Trre12g03939 | 989 | SMART | serkin_6 | 685 | 966 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre12g03939 | 989 | Pfam | Leucine rich repeat | 502 | 561 | IPR001611 | GO:0005515 | |
Trre12g03939 | 989 | Pfam | Leucine rich repeat | 163 | 223 | IPR001611 | GO:0005515 | |
Trre12g03939 | 989 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 813 | 825 | IPR008271 | GO:0004672|GO:0006468 | |
Trre12g03939 | 989 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 232 | 964 | - | - | |
Trre12g03939 | 989 | Gene3D | Ribonuclease Inhibitor | 184 | 257 | IPR032675 | - | |
Trre12g03939 | 989 | FunFam | Receptor-like protein kinase HSL1 | 669 | 768 | - | - | |
Trre12g03939 | 989 | Gene3D | Transferase(Phosphotransferase) domain 1 | 769 | 981 | - | - | |
Trre12g03939 | 989 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 769 | 977 | - | - | |
Trre12g03939 | 989 | Gene3D | Phosphorylase Kinase; domain 1 | 668 | 768 | - | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 500 | 524 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 308 | 332 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 210 | 233 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 186 | 209 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 138 | 161 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 90 | 114 | IPR003591 | - | |
Trre12g03939 | 989 | SMART | LRR_typ_2 | 234 | 258 | IPR003591 | - | |
Trre12g03939 | 989 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 23 | 183 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03939 | Trre-Chr12 | 55035507 | 55038810 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03939 | 19 | 986 | Receptor kinase-like Gene Family | AT1G28440 | 59.372 | 0.0 | 1126 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Trre12g03939 | Pkinase | 1.5e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03939 | - | - | gmx:100778128 | 1258.82 |