Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03935 ATGCTAGCTGTGGCACCATTAATGTGTAGCACAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGGAACATGTGATTTTGCTGATCTTTCCGAAGGAAACTTATTGGAAAGCATCAATTTCGAATTCGATGATGATTTCTTCGTATGCTTTGACGATGGAGATGTGTTACCGGATCTTGAAATGGACCCGGAAATGCTTGCTGAATTCTCGCTCAGCAGCGGTGAGGAATCGGAAATGAATTCATCGGTTACAATTACGAATAGCAAATCTTTTGATGATGGAAATATTGTTAATATTGAGAAAAAATTTCAAGATGAAGAGAAAGTAGGTTCTTCTTCAGATTCGGGTTCGAGCCATGTGGAAGAGATAATTAGCAAAAGAGATGAATCTGTGGTGATGAATCCATTACCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCATCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCATAGAAGATTCGTACAGGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCTAGTCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCTCGTGAAGCTGAAGCAGCAAGTTGGAGTCAAAGAAGGCAATTGTTTGGAACAAGTAGAGGAGGAGTAGTAGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTTCCTCCCATGACTCCGGTACACCATTTTAGACCTCTACATGTATGGGGTCACCATCCTATGGAACAGTCCTATATGCATATGTGGCCTAAATATTCGCCGCACCAGCCACCAGCTAATTGGGCTGCACCTGCGCAGGCGGCTCCACCTCCTAATGCTTCGTATTGGCACCAACGGCAGGCTCCAAATGCACCAACCGCAGGAACACCGTGTTTTCCACAGCCTCTGACAACAACGAGATTCGTCTCTCCAGCTATTCCGGGCATTCCACCACCCCATGCCATGTACCAAGTAGATCATGGTGTTGCCGTCCCTGCCGGTCAACAATCTCCTCCGCCTCTATTAGATTTTCATCCGTCAAATGAGAGCATAGATGCAGCAATTAGTGATGTATTATCAAAACCATATTTGCCATTGCCTCTTGGACTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTGCAGAAACAAGGAGTTCCAAAAATTCCACCCTCTTGTGCTTGA 1284 0.4377 MLAVAPLMCSTSQREMEENLSIGTCDFADLSEGNLLESINFEFDDDFFVCFDDGDVLPDLEMDPEMLAEFSLSSGEESEMNSSVTITNSKSFDDGNIVNIEKKFQDEEKVGSSSDSGSSHVEEIISKRDESVVMNPLPKEGEKGRKSSSQSKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTSRGGVVGGKRDIVNHWVAPTMGFPPMTPVHHFRPLHVWGHHPMEQSYMHMWPKYSPHQPPANWAAPAQAAPPPNASYWHQRQAPNAPTAGTPCFPQPLTTTRFVSPAIPGIPPPHAMYQVDHGVAVPAGQQSPPPLLDFHPSNESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGVPKIPPSCA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03935 427 MobiDBLite consensus disorder prediction 103 161 - -
Trre12g03935 427 MobiDBLite consensus disorder prediction 121 149 - -
Trre12g03935 427 Gene3D - 157 218 - -
Trre12g03935 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 216 IPR017930 -
Trre12g03935 427 MobiDBLite consensus disorder prediction 299 321 - -
Trre12g03935 427 SUPERFAMILY Homeodomain-like 158 217 IPR009057 -
Trre12g03935 427 FunFam Two-component response regulator 156 219 - -
Trre12g03935 427 PANTHER TRANSCRIPTION ACTIVATOR GLK1 10 426 IPR044825 GO:0003700|GO:0045893
Trre12g03935 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 214 IPR006447 GO:0003677
Trre12g03935 427 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03935 Trre-Chr12 54981043 54985717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03935 1 333 G2-like Transcription Factor Family AT5G44190 40.000 2.62e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g03935 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03935 - - gmx:100775671 573.933